DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005253
GeneCsda
SynonymsdbpA
Dpba
MSY3
MSY4
oxyR
Yb2
Ybx3
Desc.cold shock domain protein A
LocusNM_139117 chr6:131314876-131338468(-)
NM_011733 chr6:131314876-131338468(-)
DB links


Entrez 56449
MGI 2137670
Ensembl ENSMUSG00000030189
Featureprotein-coding
GO(BP)
  •   10 Terms
GO(MF)
GO(CC)
KEGG
Ver2_FPKM N/A
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005253
(v1.0)
Csda56449
Maternal RNA0.95856
SPR_Histone_Erkek_+-5KfromTSS N/A
SPR_Histone_Erkek_+-2KfromTSS N/A
SPR_Methy_Kobayashi_+-5KfromTSS N/A
SPR_Methy_Kobayashi_+-2KfromTSS N/A
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005253
(v1.0)
CsdaNM_011733,NM_13911756449
293.308241.88435.3751103.9759.9621
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005253
(v1.0)
CsdaNM_011733,NM_13911756449
377.318288.16444.2763141.51576.6519
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005253
(v1.0)
CsdaNM_011733,NM_13911756449
306.6844.7085263.901
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005253
(v1.0)
CsdaNM_011733,NM_13911756449
299.351239.456352.456
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005253
(v1.0)
CsdaNM_011733,NM_13911756449
1292.652266.73
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005253
(v1.0)
CsdaNM_011733,NM_13911756449
306.85944.0961386.562
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005253
(v1.0)
CsdaNM_011733,NM_13911756449
32.7518100.38794.56
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005253
(v1.0)
CsdaNM_011733,NM_13911756449
141.816129.45
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005253
(v1.0)
CsdaNM_011733,NM_13911756449
255.3757.1998
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005253
(v1.0)
CsdaNM_011733,NM_13911756449
12.25116.6943
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005253
(v1.0)
1041C0174E06-3Mm.31213U027935NAP032870-1Csda;Q61478U,F,22.88452.9643.13133.05542.89453.09392.9762
0005253
(v1.0)
18573L0215E11-3Mm.193526Csda56449
U027935NAP001708-002Csda;TC935246,TC826815Q61478U,F,23.42373.38983.20263.47873.41573.72773.7226
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005253
(v1.0)
1451012_a_atMm.458000CsdaNM_139117.2,NM_011733.256449
350.4336.125336.7292.525472.55
0005253
(v1.0)
1435800_a_atMm.458000CsdaNM_139117.2,NM_011733.256449
2038.11552.9752867.7751577.051741.375
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0005253
(v1.0)
Csda56449
24171121112626