• • TOP
  • Introduction
  • Gene Search
    
  • Table Browser
  • Tools
  • GEO collection
  • Help
  • Tutorials
  • Statistics
  • Download
  • Credits

DB status: OK
Last modified: 2024/03/24

Gene Search:

Warning: Undefined array key 0 in /hshare1/ZETTAI_path_WA_slash_usr_slash_proj_KARA/usr/proj/dbtmee/cgi-bin/gc_function.php on line 224

Warning: Trying to access array offset on null in /hshare1/ZETTAI_path_WA_slash_usr_slash_proj_KARA/usr/proj/dbtmee/cgi-bin/gc_function.php on line 224

Warning: Undefined array key 0 in /hshare1/ZETTAI_path_WA_slash_usr_slash_proj_KARA/usr/proj/dbtmee/cgi-bin/gc_function.php on line 225

Warning: Trying to access array offset on null in /hshare1/ZETTAI_path_WA_slash_usr_slash_proj_KARA/usr/proj/dbtmee/cgi-bin/gc_function.php on line 225

DBTMEE:0005253

Gene	Csda
Synonyms	dbpA Dpba MSY3 MSY4 oxyR Yb2 Ybx3
Description	cold shock domain protein A
Locus	NM_139117 UCSC: chr6:131314876-131338468(-) OLP: chr6:131314876-131338468(-) NM_011733 UCSC: chr6:131314876-131338468(-) OLP: chr6:131314876-131338468(-)
DB links	Entrez 56449 MGI 2137670 Ensembl ENSMUSG00000030189
Feature	protein-coding
GO_BP	10 Terms negative regulation of transcription from RNA polymerase II promoter (GO:0000122) in utero embryonic development (GO:0001701) transcription, DNA-dependent (GO:0006351) regulation of transcription, DNA-dependent (GO:0006355) spermatogenesis (GO:0007283) male gonad development (GO:0008584) fertilization (GO:0009566) negative regulation of apoptotic process (GO:0043066) positive regulation of organ growth (GO:0046622) negative regulation of skeletal muscle tissue development (GO:0048642)
GO_MF	6 Terms nucleic acid binding (GO:0003676) DNA binding (GO:0003677) single-stranded DNA binding (GO:0003697) RNA binding (GO:0003723) mRNA 3'-UTR binding (GO:0003730) protein binding (GO:0005515)
GO_CC	5 Terms nucleus (GO:0005634) cytoplasm (GO:0005737) polysome (GO:0005844) gap junction (GO:0005921) ribonucleoprotein complex (GO:0030529)
KEGG	1 Terms Tight junction (mmu04530)
Ver2_FPKM	see  (v2.0)
SPR_Histone_Erkek_5KaroundTSS	N/A
SPR_Histone_Erkek_2KaroundTSS	N/A
SPR_Methy_Kobayashi_5KaroundTSS	N/A
SPR_Methy_Kobayashi_2KaroundTSS	N/A
SOLiD_OocyteTo4C_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez SPR_FPKM Oo_FPKM 1C_FPKM 2C_FPKM 4C_FPKM MEF_FPKM 0005253 (v1.0) Csda NM_011733,NM_139117 56449 293.308 241.884 35.3751 103.97 59.9621
SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_FPKM SPR_FPKM 1C_FPKM 0005253 (v1.0) Csda NM_011733,NM_139117 56449 306.68 44.7085 263.901
SOLiD_Partheno1C_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_FPKM 1C_FPKM p1C_FPKM 0005253 (v1.0) Csda NM_011733,NM_139117 56449 299.351 239.456 352.456
SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_FPKM SPR_FPKM p1C_FPKM 0005253 (v1.0) Csda NM_011733,NM_139117 56449 306.859 44.0961 386.562
SOLiD_Partheno4C_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez 2C_FPKM 4C_FPKM p4C_FPKM 0005253 (v1.0) Csda NM_011733,NM_139117 56449 32.7518 100.387 94.56
Illumina_Oo_2C_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_FPKM 2C_FPKM 0005253 (v1.0) Csda NM_011733,NM_139117 56449 255.37 57.1998
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided	DBTMEE Gene RefSeq Entrez Oo_1_1 Oo_2_1 0005253 (v1.0) Csda NM_011733,NM_139117 56449 12.251 16.6943
NIA60mer	DBTMEE Array_Feature_Number Oligo_Parent_Clone Unigene Gene Entrez U_Cluster NAP_Cluster Gene_U/NAP TIGR SwissProt EST Oo 1C 2C 4C 8C Morula Blastocyst 0005253 (v1.0) 1041 C0174E06-3 Mm.31213 U027935 NAP032870-1 Csda; Q61478 U,F,2 2.8845 2.964 3.1313 3.0554 2.8945 3.0939 2.9762 0005253 (v1.0) 18573 L0215E11-3 Mm.193526 Csda 56449 U027935 NAP001708-002 Csda; TC935246,TC826815 Q61478 U,F,2 3.4237 3.3898 3.2026 3.4787 3.4157 3.7277 3.7226
MOE430	DBTMEE Probe_ID Unigene Gene RefSeq Entrez Oo 1C 2C 8C Blastocyst 0005253 (v1.0) 1451012_a_at Mm.458000 Csda NM_139117.2,NM_011733.2 56449 350.4 336.125 336.7 292.525 472.55 0005253 (v1.0) 1435800_a_at Mm.458000 Csda NM_139117.2,NM_011733.2 56449 2038.1 1552.97 2867.77 1577.05 1741.38
Agilent44K	N/A
Proteome	DBTMEE Gene Entrez GV_seqCount MII_seqCount Zygote_seqCount GV_specCount MII_specCount Zygote_specCount 0005253 (v1.0) Csda 56449 24 17 11 211 126 26