DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005255
GeneCsde1
SynonymsD3Jfr1
unr
Desc.cold shock domain containing E1, RNA binding
LocusNM_001161854 chr3:102824469-102862112(+)
NM_144901 chr3:102824469-102862112(+)
DB links


Entrez 229663
MGI 92356
Ensembl ENSMUSG00000068823
Featureprotein-coding
GO(BP)
  •   1 Terms
      regulation of transcription, DNA-dependent (GO:0006355)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005189
(v2.0)
Csde1NM_001161854,NM_144901229663
94.7459134.993246.4226.384332.213106.35194.2496198.657297.569113.948
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005255
(v1.0)
Csde1229663
Major ZGA0.87092
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005189
(v2.0)
Csde1229663
572/3530.183408/3530.0924272/3533.1815569/3532.012316/353-2.3352104/353-2.3457
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005189
(v2.0)
Csde1229663
335/1610.5415211/1610.2724262/1614.2042540/1613.05756/161-2.502643/161-2.463
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005189
(v2.0)
Csde1229663
32.611111628.11
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005189
(v2.0)
Csde1229663
12.70659313.66
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005255
(v1.0)
Csde1NM_001161854,NM_144901229663
140.278170.361168.632230.51166.3984
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005255
(v1.0)
Csde1FR129756,FR399205,NM_001161854,NM_144901229663
373.472383.018537.455695.368214.807
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005255
(v1.0)
Csde1NM_001161854,NM_144901229663
146.67434.65185.868
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005255
(v1.0)
Csde1NM_001161854,NM_144901229663
143.168168.65146.997
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005255
(v1.0)
Csde1NM_001161854,NM_144901229663
146.75934.1754161.222
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005255
(v1.0)
Csde1NM_001161854,NM_144901229663
156.127222.567205.271
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005255
(v1.0)
Csde1FR129756,FR399205,NM_001161854,NM_144901229663
881.544997.353
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005255
(v1.0)
Csde1NM_001161854,NM_144901229663
211.434242.977
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005255
(v1.0)
Csde1NM_001161854,NM_144901229663
52.650878.3728
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005255
(v1.0)
6441H3025B12-3Mm.11204D3Jfr1229663
U003654NAP098625-001D3Jfr1;MGC19174;unr;TC877068,TC841191,TC841189Q91W50U,F,23.96033.9113.94154.34333.5763.8483.6799
0005255
(v1.0)
11934H3128B12-5D3Jfr1229663
U003654NAP098625-001D3Jfr1;MGC19174;unr;TC841204,TC841195,TC841192,TC841189Q91W50U,F,22.93942.92172.93012.84123.01792.89032.9613
0005255
(v1.0)
19585L0283C07-3Mm.11204D3Jfr1229663
U003654NAP031446-1D3Jfr1;MGC19174;unr;TC841191,TC841189Q91W50U,F,24.30184.32853.56593.62953.56643.59953.5506
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005255
(v1.0)
1427396_a_atMm.277713Csde1NM_144901.3,NM_001161854.1229663
2249.152651.6255196.64170.1251716.1
0005255
(v1.0)
1423997_atMm.277713Csde1NM_144901.3,NM_001161854.1229663
315.075426.45753.925352.875274.125
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005255
(v1.0)
A_51_P513934D3Jfr1NM_144901229663
11P0.9710.819P
0005255
(v1.0)
A_52_P202455D3Jfr1NM_144901229663
11P1.0940.533P
0005255
(v1.0)
A_52_P320464D3Jfr1NM_144901229663
11P0.6340.154P
Proteome N/A