DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005320
GeneCtcf
Synonyms
Desc.CCCTC-binding factor
LocusNM_181322 chr8:108160438-108206822(+)
DB links


Entrez 13018
MGI 109447
Ensembl ENSMUSG00000005698
Vega OTTMUSG00000017298
Featureprotein-coding
GO(BP)
  •   17 Terms
      DNA methylation (GO:0006306)
      regulation of gene expression by genetic imprinting (GO:0006349)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      chromosome segregation (GO:0007059)
      dosage compensation by inactivation of X chromosome (GO:0009048)
      maintenance of DNA methylation (GO:0010216)
      positive regulation of gene expression (GO:0010628)
      negative regulation of gene expression (GO:0010629)
      chromatin modification (GO:0016568)
      nucleosome positioning (GO:0016584)
      regulation of histone methylation (GO:0031060)
      regulation of histone acetylation (GO:0035065)
      regulation of gene expression, epigenetic (GO:0040029)
      regulation of molecular function, epigenetic (GO:0040030)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      positive regulation of transcription, DNA-dependent (GO:0045893)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005256
(v2.0)
CtcfNM_18132213018
12.920522.296336.304846.531432.524227.134210.351337.118633.168623.7252
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005320
(v1.0)
Ctcf13018
2-Cell Transient0.91157
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005256
(v2.0)
Ctcf13018
726/3670.4703495/3670.3147214/3672.7827561/3671.936210/367-3.0187123/367-2.1627
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005256
(v2.0)
Ctcf13018
416/1391.0633240/1390.6679208/1394.0687522/1393.21712/139-3.518867/139-1.6303
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005256
(v2.0)
Ctcf13018
34.576812228.34
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005256
(v2.0)
Ctcf13018
7.6375938.21
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005320
(v1.0)
CtcfNM_18132213018
23.172425.179934.676922.49057.17151
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005320
(v1.0)
CtcfNM_18132213018
28.532827.939340.205726.65198.4573
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005320
(v1.0)
CtcfNM_18132213018
24.22894.7251527.4718
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005320
(v1.0)
CtcfNM_18132213018
23.649824.92727.3828
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005320
(v1.0)
CtcfNM_18132213018
28.369631.5287
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005320
(v1.0)
CtcfNM_18132213018
24.24294.6604330.0325
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005320
(v1.0)
CtcfNM_18132213018
32.105421.715522.8673
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005320
(v1.0)
CtcfNM_18132213018
219.45390.2264
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005320
(v1.0)
CtcfNM_18132213018
47.525343.3349
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005320
(v1.0)
CtcfNM_18132213018
20.47422.3367
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005320
(v1.0)
6630H3029E07-3Mm.493Ctcf13018
Ctcf3.48033.38693.78263.55883.53463.61153.4741
0005320
(v1.0)
6996H3040A12-3Mm.493Ctcf13018
Ctcf3.85493.98023.54943.73133.46983.79543.6845
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005320
(v1.0)
1418330_atMm.269474CtcfNM_181322.313018
229.725322.675702.85271.025186.95
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005320
(v1.0)
A_51_P513785CtcfNM_00779413018
11P0.7790.242P
Proteome N/A