DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005340
GeneCtnnal1
SynonymsACRP
Catnal1
Desc.catenin (cadherin associated protein), alpha-like 1
LocusNM_018761 chr4:56823807-56878083(-)
DB links


Entrez 54366
MGI 1859649
Ensembl ENSMUSG00000038816
Vega OTTMUSG00000007317
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005277
(v2.0)
Ctnnal1NM_01876154366
1.8319520.987763.49922.689137.34076.692397.3363341.530626.66068.39062
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005340
(v1.0)
Ctnnal154366
1-Cell Transient0.93624
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005277
(v2.0)
Ctnnal154366
706/4190.2394508/4190.1613148/4192.0682414/4191.3088173/4190.7757847/4190.4152
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005277
(v2.0)
Ctnnal154366
354/1850.4214259/1850.3675140/1853.1176402/1852.435134/1851.5711609/1851.1154
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005277
(v2.0)
Ctnnal154366
54.116810949.65
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005277
(v2.0)
Ctnnal154366
13.8396620.97
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005340
(v1.0)
Ctnnal1NM_01876154366
21.808143.940516.90425.91595.11998
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005340
(v1.0)
Ctnnal1FR025948,NM_01876154366
1208.162020.87375.06361.111211.758
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005340
(v1.0)
Ctnnal1NM_01876154366
22.80240.66996347.94
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005340
(v1.0)
Ctnnal1NM_01876154366
22.257443.499330.7083
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005340
(v1.0)
Ctnnal1FR025948,NM_01876154366
2041.851134.92
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005340
(v1.0)
Ctnnal1NM_01876154366
22.81560.66078733.6798
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005340
(v1.0)
Ctnnal1NM_01876154366
15.650425.022918.4065
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005340
(v1.0)
Ctnnal1FR025948,NM_01876154366
60.1192162.551
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005340
(v1.0)
Ctnnal1NM_01876154366
8.1813216.8004
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005340
(v1.0)
Ctnnal1NM_01876154366
27.312530.464
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005340
(v1.0)
1049C0175A01-3Mm.200955Catnal154366
3.24283.07933.16533.11633.36353.23123.2744
0005340
(v1.0)
1226C0188H04-3Mm.200955Catnal154366
U025085NAP096059-001Catnal1;TC899220O88327U,F,23.80473.84453.32463.6383.36593.5543.3758
0005340
(v1.0)
6493H3026B02-3Mm.200955Catnal154366
U025085NAP034791-1Catnal1;TC899220O88327U,F,24.33734.49393.63683.78253.61463.77843.5725
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005340
(v1.0)
1420929_atMm.218891Ctnnal1NM_018761.354366
59.7562.368.47500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005340
(v1.0)
A_51_P202714Ctnnal1NM_01876154366
11P1.0360.809P
0005340
(v1.0)
A_52_P372151Ctnnal1NM_01876154366
11P1.1790.347P
Proteome N/A