DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005349
GeneCtr9
SynonymsSh2bp1
Tsbp
Tsp
Desc.Ctr9, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
LocusNM_009431 chr7:118172465-118199891(+)
DB links


Entrez 22083
MGI 109345
Ensembl ENSMUSG00000005609
Vega OTTMUSG00000023898
Featureprotein-coding
GO(BP)
  •   17 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      endodermal cell fate commitment (GO:0001711)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      JAK-STAT cascade (GO:0007259)
      histone monoubiquitination (GO:0010390)
      Wnt receptor signaling pathway (GO:0016055)
      stem cell maintenance (GO:0019827)
      positive regulation of transcription elongation from RNA polymerase II promoter (GO:0032968)
      histone H2B ubiquitination (GO:0033523)
      negative regulation of myeloid cell differentiation (GO:0045638)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of histone H3-K4 methylation (GO:0051571)
      interleukin-6-mediated signaling pathway (GO:0070102)
      cellular response to lipopolysaccharide (GO:0071222)
      histone H3-K4 trimethylation (GO:0080182)
      positive regulation of histone H3-K79 methylation (GO:2001162)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005286
(v2.0)
Ctr9NM_00943122083
8.9821516.548732.519441.653439.444614.246823.834627.325142.613415.4663
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005349
(v1.0)
Ctr922083
Major ZGA0.85015
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005286
(v2.0)
Ctr922083
634/4180.088455/4180.0061417/4183.55981002/4182.585481/418-0.3063585/418-0.1141
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005286
(v2.0)
Ctr922083
280/1700.2059190/1700.044406/1704.7611950/1703.79416/170-1.29992/170-1.4701
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005286
(v2.0)
Ctr922083
51.535513538.17
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005286
(v2.0)
Ctr922083
23.82679724.56
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005349
(v1.0)
Ctr9NM_00943122083
17.198822.514430.985727.345716.8356
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005349
(v1.0)
Ctr9NM_00943122083
199.366189.13405.527404.028147.707
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005349
(v1.0)
Ctr9NM_00943122083
17.98293.2848624.5637
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005349
(v1.0)
Ctr9NM_00943122083
17.553122.288320.2311
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005349
(v1.0)
Ctr9NM_00943122083
120.405146.866
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005349
(v1.0)
Ctr9NM_00943122083
17.99333.2398722.1888
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005349
(v1.0)
Ctr9NM_00943122083
28.68826.403429.5118
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005349
(v1.0)
Ctr9NM_00943122083
196.092223.099
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005349
(v1.0)
Ctr9NM_00943122083
6.046092.1357
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005349
(v1.0)
Ctr9NM_00943122083
1.37982.17536
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005349
(v1.0)
1422679_s_atMm.255858Ctr9NM_009431.222083
00129.20122.925
0005349
(v1.0)
1448076_atMm.255858Ctr9NM_009431.222083
0032.22541.7519.45
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005349
(v1.0)
A_51_P370163Sh2bp1NM_00943122083
11P1.240.369P
Proteome N/A