DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005459
GeneCyhr1
SynonymsChrp
Desc.cysteine and histidine rich 1
LocusNM_019396 chr15:76476197-76490491(-)
NM_180962 chr15:76488571-76490538(-)
DB links


Entrez 54151
MGI 1859320
Ensembl ENSMUSG00000053929
Vega OTTMUSG00000040104
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005397
(v2.0)
Cyhr1NM_001276321,NM_001276322,NM_001276333,NM_001276334,NM_001276335,NM_019396,NM_18096254151
63.273523.786816.76929.830810.145941.437937.704225.253214.93843.6686
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005459
(v1.0)
Cyhr154151
Maternal RNA0.96336
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005397
(v2.0)
Cyhr154151
804/5600.0089330/560-0.877135/5601.5283344/5600.62662/560-1.1049512/560-0.7269
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005397
(v2.0)
Cyhr154151
338/246-0.0542123/246-1.109474/2461.8179206/2461.067627/246-1.1016204/246-0.8646
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005397
(v2.0)
Cyhr154151
58.074318431.56
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005397
(v2.0)
Cyhr154151
23.181910721.67
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005459
(v1.0)
Cyhr1NM_019396,NM_18096254151
50.687520.84427.307635.6660431.6357
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005459
(v1.0)
Cyhr1NM_019396,NM_18096254151
89.31439.646719.733824.149768.5929
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005459
(v1.0)
Cyhr1NM_019396,NM_18096254151
52.998432.072622.7414
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005459
(v1.0)
Cyhr1NM_019396,NM_18096254151
51.731720.634933.3921
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005459
(v1.0)
Cyhr1NM_019396,NM_18096254151
24.027139.7414
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005459
(v1.0)
Cyhr1NM_019396,NM_18096254151
53.029231.633336.6233
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005459
(v1.0)
Cyhr1NM_019396,NM_18096254151
6.765735.4707910.4603
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005459
(v1.0)
Cyhr1NM_019396,NM_18096254151
53.161993.3887
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005459
(v1.0)
Cyhr1NM_019396,NM_18096254151
6.781941.14636
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005459
(v1.0)
Cyhr1NM_019396,NM_18096254151
3.01832.30118
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005459
(v1.0)
3357C0643H10-3Mm.18561Cyhr154151
U036354NAP098427-001Cyhr1;TC842793,TC842792Q9D1343.37323.23413.28083.18733.90793.58983.8469
0005459
(v1.0)
6825H3035C06-3Mm.18561Cyhr154151
U036354NAP019700-001Cyhr1;TC842788Q9D1343.18423.09763.42943.7033.48723.56163.6618
0005459
(v1.0)
19079L0245D08-3Mm.7597U036354NAP099924-001Cyhr1;TC843930Q9D1343.77373.70763.74353.76583.89363.76053.7769
0005459
(v1.0)
19452L0274B09-3Mm.18561Cyhr154151
U036354NAP098427-001Cyhr1;TC842792Q9D1342.46942.4662.39882.32532.32952.4962.5227
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005459
(v1.0)
1435364_atMm.247752Cyhr1NM_019396.2,NM_180962.154151
031.849.9114.02593.975
0005459
(v1.0)
1435328_atMm.247752Cyhr1NM_019396.2,NM_180962.154151
470.0750446.8250633.375
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005459
(v1.0)
A_51_P294445Cyhr1NM_01939654151
11P0.9240.575P
0005459
(v1.0)
A_52_P134083Cyhr1NM_18096254151
11P0.7260.194P
0005459
(v1.0)
A_52_P668393Cyhr1AK02899454151
11P0.6420.162P
Proteome N/A