DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005584
GeneCyth3
Synonymscytohesin 3
Grp1
Pscd3
Desc.cytohesin 3
LocusNM_011182 chr5:144383316-144471117(+)
NM_001163548 chr5:144412110-144471117(+)
DB links


Entrez 19159
MGI 1335107
Ensembl ENSMUSG00000018001
Vega OTTMUSG00000023404
Featureprotein-coding
GO(BP)
  •   4 Terms
      regulation of ARF protein signal transduction (GO:0032012)
      positive regulation of cell adhesion (GO:0045785)
      regulation of catalytic activity (GO:0050790)
      establishment of epithelial cell polarity (GO:0090162)
GO(MF)
  •   5 Terms
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005524
(v2.0)
Cyth3NM_001163548,NM_01118219159
14.638329.786823.74217.200366.397446.5750359.469923.40738.622976.96499
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005584
(v1.0)
Cyth319159
Maternal RNA0.99951
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005524
(v2.0)
Cyth319159
631/477-0.1089465/477-0.1526485/4773.59181314/4772.786750/477-1.1802426/477-0.7604
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005524
(v2.0)
Cyth319159
310/2160.0084204/216-0.1977453/2164.59391153/2163.732119/216-1.4027207/216-0.6569
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005524
(v2.0)
Cyth319159
67.806916441.35
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005524
(v2.0)
Cyth319159
18.528110317.99
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005584
(v1.0)
Cyth3NM_001163548,NM_01118219159
30.96516.495.361334.4399542.1417
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005584
(v1.0)
Cyth3NM_001163548,NM_01118219159
868.356357.70598.4308118.79318.092
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005584
(v1.0)
Cyth3NM_001163548,NM_01118219159
32.37675.353517.9909
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005584
(v1.0)
Cyth3NM_001163548,NM_01118219159
31.602916.324417.3799
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005584
(v1.0)
Cyth3NM_001163548,NM_01118219159
2310.11049.41
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005584
(v1.0)
Cyth3NM_001163548,NM_01118219159
32.39555.2801719.0617
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005584
(v1.0)
Cyth3NM_001163548,NM_01118219159
4.963764.286956.00463
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005584
(v1.0)
Cyth3NM_001163548,NM_01118219159
322.514684.43
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005584
(v1.0)
Cyth3NM_001163548,NM_01118219159
10.6210.544629
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005584
(v1.0)
Cyth3NM_001163548,NM_01118219159
4.088962.55315
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005584
(v1.0)
10424H3095H05-3Mm.19065Pscd319159
Pscd32.31392.49572.52262.41082.21212.40052.2805
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005584
(v1.0)
A_51_P488928Pscd3NM_01118219159
11P1.920.0967P
0005584
(v1.0)
A_52_P662873Pscd3NM_01118219159
11P1.0640.723P
Proteome N/A