DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005842
GeneDdx3x
SynonymsD1Pas1-rs2
Ddx3
embryonic RNA helicase
Fin14
Desc.DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked
LocusNM_010028 chrX:12858148-12871109(+)
DB links


Entrez 13205
MGI 103064
Ensembl ENSMUSG00000000787
Vega OTTMUSG00000017078
Featureprotein-coding
GO(BP)
  •   31 Terms
      ATP catabolic process (GO:0006200)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      regulation of translation (GO:0006417)
      apoptotic process (GO:0006915)
      chromosome segregation (GO:0007059)
      intracellular protein kinase cascade (GO:0007243)
      metabolic process (GO:0008152)
      extrinsic apoptotic signaling pathway via death domain receptors (GO:0008625)
      response to virus (GO:0009615)
      RNA secondary structure unwinding (GO:0010501)
      negative regulation of translation (GO:0017148)
      positive regulation of cell growth (GO:0030307)
      negative regulation of cell growth (GO:0030308)
      negative regulation of protein complex assembly (GO:0031333)
      stress granule assembly (GO:0034063)
      ribosome biogenesis (GO:0042254)
      mature ribosome assembly (GO:0042256)
      positive regulation of apoptotic process (GO:0043065)
      negative regulation of apoptotic process (GO:0043066)
      negative regulation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0043154)
      positive regulation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0043280)
      innate immune response (GO:0045087)
      positive regulation of translation (GO:0045727)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of translational initiation (GO:0045948)
      cellular response to arsenic-containing substance (GO:0071243)
      cellular response to osmotic stress (GO:0071470)
      intrinsic apoptotic signaling pathway (GO:0097193)
      positive regulation of G1/S transition of mitotic cell cycle (GO:1900087)
      negative regulation of intrinsic apoptotic signaling pathway (GO:2001243)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      RIG-I-like receptor signaling pathway (mmu04622)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005767
(v2.0)
Ddx3xNM_01002813205
53.517794.5594199.604172.243249.091183.03366.5271137.563288.497161.566
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005842
(v1.0)
Ddx3x13205
MGA0.99547
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005767
(v2.0)
Ddx3x13205
389/2200.3082235/220-0.0209312/2204.0323897/2203.344118/220-1.5027165/220-1.0077
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005767
(v2.0)
Ddx3x13205
223/1080.5291121/1080.0473307/1084.9593809/1084.20495/108-2.166744/108-1.8593
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005767
(v2.0)
Ddx3x13205
32.764112626
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005767
(v2.0)
Ddx3x13205
4.2858864.98
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005842
(v1.0)
Ddx3xNM_01002813205
98.2898137.857128.259172.26946.5849
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005842
(v1.0)
Ddx3xNM_01002813205
102.77119.572150.405
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005842
(v1.0)
Ddx3xNM_01002813205
100.315136.473102.139
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005842
(v1.0)
Ddx3xFR196141,NM_01002813205
1687.731417.5
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005842
(v1.0)
Ddx3xNM_01002813205
102.83119.3039112.022
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005842
(v1.0)
Ddx3xNM_01002813205
118.748166.333199.056
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005842
(v1.0)
Ddx3xFR196141,NM_01002813205
993.4881125.99
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005842
(v1.0)
Ddx3xNM_01002813205
165.8384.2163
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005842
(v1.0)
Ddx3xNM_01002813205
50.9533219.314
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005842
(v1.0)
1423043_s_atMm.289662Ddx3xNM_010028.313205
1554.32346.7251969.152207.051006.8
0005842
(v1.0)
1416467_atMm.289662Ddx3xNM_010028.313205
325.625693.225346.025574.025307.8
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005842
(v1.0)
A_51_P290018Ddx3xU4238613205
11P1.0830.57P
0005842
(v1.0)
A_51_P418420Ddx3xNM_01002813205
11P0.690.167P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0005842
(v1.0)
Ddx3x13205
15196294316