DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005844
GeneDdx4
SynonymsMvh
mvh / m'vasa
VASA
Desc.DEAD (Asp-Glu-Ala-Asp) box polypeptide 4
LocusNM_010029 chr13:113388541-113442518(-)
NM_001145885 chr13:113388541-113442518(-)
DB links


Entrez 13206
MGI 102670
Ensembl ENSMUSG00000021758
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005769
(v2.0)
Ddx4NM_001145885,NM_01002913206
8.1954955.409153.050919.505910.380512.24850.026385133.300412.221811.0574
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005844
(v1.0)
Ddx413206
Maternal RNA0.98329
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005769
(v2.0)
Ddx413206
730/4020.3471566/4020.3766247/4022.8613970/4022.5946157/4020.69571020/4020.7425
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005769
(v2.0)
Ddx413206
345/1340.8468245/1340.75191/1343.9949663/1343.613441/1340.3399244/1340.2635
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005769
(v2.0)
Ddx413206
60.996810061
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005769
(v2.0)
Ddx413206
16.37045330.89
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005844
(v1.0)
Ddx4NM_001145885,NM_01002913206
57.589236.531114.50987.180470.0178541
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005844
(v1.0)
Ddx4NM_001145885,NM_01002913206
877.945344.478104.87176.37720.020345
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005844
(v1.0)
Ddx4NM_001145885,NM_01002913206
60.21482.9966739.8562
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005844
(v1.0)
Ddx4NM_001145885,NM_01002913206
58.775636.164324.6959
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005844
(v1.0)
Ddx4NM_001145885,NM_01002913206
342.607536.564
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005844
(v1.0)
Ddx4NM_001145885,NM_01002913206
60.24972.9556327.0857
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005844
(v1.0)
Ddx4NM_001145885,NM_01002913206
13.43386.933038.4376
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005844
(v1.0)
Ddx4NM_001145885,NM_01002913206
52.88882.9024
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005844
(v1.0)
Ddx4NM_001145885,NM_01002913206
31.616611.3939
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005844
(v1.0)
Ddx4NM_001145885,NM_01002913206
45.612177.9021
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005844
(v1.0)
5185D14859.1Mm.12818Ddx413206
U035180NAP009333-001Ddx4;TC838104Q61496U,F,22.61762.55882.37452.50072.35092.25772.2619
0005844
(v1.0)
12124H3134G04-3Ddx413206
U035180NAP009333-001Ddx4;TC838104Q61496U,F,23.02032.79692.72013.10752.63162.47682.4251
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005844
(v1.0)
1427242_atMm.12818Ddx4NM_001145885.1,NM_010029.213206
283.575287.325178.65017.8
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005844
(v1.0)
A_51_P223569Ddx4NM_01002913206
11P0.7530.215P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0005844
(v1.0)
Ddx413206
200200