DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005846
GeneDdx42
SynonymsSF3b125
Desc.DEAD (Asp-Glu-Ala-Asp) box polypeptide 42
LocusNM_028074 chr11:106078240-106110454(+)
DB links


Entrez 72047
MGI 1919297
Ensembl ENSMUSG00000020705
Vega OTTMUSG00000003289
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005771
(v2.0)
Ddx42NM_02807472047
15.499816.553717.275820.742823.919120.370324.522817.292522.810521.5041
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005846
(v1.0)
Ddx4272047
MGA0.96488
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005771
(v2.0)
Ddx4272047
699/3770.377510/3770.319291/3773.1868831/3772.46379/377-3.194677/377-2.8667
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005771
(v2.0)
Ddx4272047
343/1760.4476225/1760.2369279/1764.1747754/1763.41177/176-2.435439/176-2.7266
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005771
(v2.0)
Ddx4272047
61.238615739.01
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005771
(v2.0)
Ddx4272047
16.492111114.86
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005846
(v1.0)
Ddx42NM_02807472047
17.208511.980815.438716.592117.2581
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005846
(v1.0)
Ddx42NM_02807472047
22.218814.494226.173433.441138.1704
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005846
(v1.0)
Ddx42NM_02807472047
17.9935.6684513.0713
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005846
(v1.0)
Ddx42NM_02807472047
17.56311.860512.8189
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005846
(v1.0)
Ddx42NM_02807472047
91.646136.0471
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005846
(v1.0)
Ddx42NM_02807472047
18.00355.5908114.0593
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005846
(v1.0)
Ddx42NM_02807472047
14.293816.020315.8121
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005846
(v1.0)
Ddx42NM_02807472047
40.924435.445
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005846
(v1.0)
Ddx42NM_02807472047
11.49392.18587
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005846
(v1.0)
Ddx42NM_02807472047
2.281133.28993
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005846
(v1.0)
11956H3129B01-3Mm.413671810047H21Rik72047
U013467NAP108391-11810047H21Rik;TC930399Q9D8Q2U,F,22.99253.17763.12283.28042.62972.90842.7813
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005846
(v1.0)
1427022_atMm.41367Ddx42NM_028074.472047
95.2575.25142.175102.1125.975
0005846
(v1.0)
1443719_x_atMm.41367Ddx42NM_028074.472047
310.9750000
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005846
(v1.0)
A_51_P481569Ddx42NM_02807472047
11P0.9320.608P
0005846
(v1.0)
A_52_P346367Ddx42NM_02807472047
11P0.3420.08P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0005846
(v1.0)
Ddx4272047
020030