DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005851
GeneDdx5
SynonymsHlr1
p68
Desc.DEAD (Asp-Glu-Ala-Asp) box polypeptide 5
LocusNM_007840 chr11:106641670-106649808(-)
DB links


Entrez 13207
MGI 105037
Ensembl ENSMUSG00000020719
Vega OTTMUSG00000003589
Featureprotein-coding
GO(BP)
  •   12 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      regulation of alternative mRNA splicing, via spliceosome (GO:0000381)
      in utero embryonic development (GO:0001701)
      ATP catabolic process (GO:0006200)
      circadian rhythm (GO:0007623)
      positive regulation of intracellular estrogen receptor signaling pathway (GO:0033148)
      positive regulation of DNA damage response, signal transduction by p53 class mediator (GO:0043517)
      regulation of viral genome replication (GO:0045069)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      regulation of androgen receptor signaling pathway (GO:0060765)
      intrinsic apoptotic signaling pathway by p53 class mediator (GO:0072332)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005776
(v2.0)
Ddx5NM_007840,NR_03722413207
3626.68111.519153.074125.23705.435288.216433.6275.6575300.826295.236
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005851
(v1.0)
Ddx513207
MGA0.9695
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005776
(v2.0)
Ddx513207
756/3830.4672411/383-0.0144771/3834.56733066/3834.323215/383-2.53986/383-2.7329
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005776
(v2.0)
Ddx513207
449/1750.8429190/1750.0024594/1755.26991770/1754.64986/175-2.6244/175-2.5505
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005776
(v2.0)
Ddx513207
54.442623123.57
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005776
(v2.0)
Ddx513207
14.32361897.58
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005851
(v1.0)
Ddx5NM_00784013207
54.554765.333193.2908148.564126.06
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005851
(v1.0)
Ddx5NM_007840,NR_03722413207
26.142655.475966.3047165.031219.94
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005851
(v1.0)
Ddx5NM_00784013207
57.04255.228671.2798
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005851
(v1.0)
Ddx5NM_00784013207
55.678664.67755.9852
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005851
(v1.0)
Ddx5NM_007840,NR_03722413207
1059.37112.322
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005851
(v1.0)
Ddx5NM_00784013207
57.075154.472261.4026
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005851
(v1.0)
Ddx5NM_00784013207
86.3727143.444138.974
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005851
(v1.0)
Ddx5NM_007840,NR_03722413207
511.171203.418
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005851
(v1.0)
Ddx5NM_00784013207
95.498566.1181
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005851
(v1.0)
Ddx5NM_00784013207
21.176227.0961
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005851
(v1.0)
6374H3023G09-3Ddx513207
U033549NAP100969-001TC920799,TC813512,TC813507,TC813482,TC813481Q61656U,F,23.59613.53173.84044.45393.96954.05684.1363
0005851
(v1.0)
18541L0213B07-3Ddx513207
Ddx53.64063.63713.8874.47754.27244.34684.3654
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005851
(v1.0)
1419653_a_atMm.220038Ddx5NM_007840.313207
390.25470.1751415.6752246.71367.525
0005851
(v1.0)
1423645_a_atMm.220038Ddx5NM_007840.313207
392.725880.175230.075154.275256.625
0005851
(v1.0)
1433809_atMm.220038Ddx5NM_007840.313207
102.1750000
0005851
(v1.0)
1454793_x_atMm.220038Ddx5NM_007840.313207
103.85129532.925697.1356.375
0005851
(v1.0)
1438371_x_atMm.220038Ddx5NM_007840.313207
484.7506.31561.0252188.225884.925
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005851
(v1.0)
A_51_P394065Ddx5NM_00784013207
11P0.850.35P
0005851
(v1.0)
A_52_P611798Ddx5BC06291613207
11P1.3740.194P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0005851
(v1.0)
Ddx513207
232254