DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005944
GeneDennd5a
SynonymsORF37
Rab6ip1
Desc.DENN/MADD domain containing 5A
LocusNM_021494 chr7:117037295-117103936(-)
DB links


Entrez 19347
MGI 1201681
Ensembl ENSMUSG00000035901
Vega OTTMUSG00000026153
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005870
(v2.0)
Dennd5aNM_02149419347
21.55366.4506813.345340.127132.370810.478438.590611.91526.21219.54915
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005944
(v1.0)
Dennd5a19347
Major ZGA0.97569
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005870
(v2.0)
Dennd5a19347
572/404-0.0111391/404-0.16391/4041.4237275/4040.7726130/4040.4182732/4040.2576
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005870
(v2.0)
Dennd5a19347
272/1800.0823175/180-0.155979/1802.337203/1801.491844/1800.0248287/1800.0733
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005870
(v2.0)
Dennd5a19347
49.431910746.2
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005870
(v2.0)
Dennd5a19347
10.31146316.37
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005944
(v1.0)
Dennd5aNM_02149419347
6.706649.2519329.895422.459927.3171
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005944
(v1.0)
Dennd5aNM_02149419347
84.5931153.722417.843392.863421.666
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005944
(v1.0)
Dennd5aNM_02149419347
7.012417.8823810.0941
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005944
(v1.0)
Dennd5aNM_02149419347
6.844819.159038.82118
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005944
(v1.0)
Dennd5aNM_02149419347
113.99391.1258
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005944
(v1.0)
Dennd5aNM_02149419347
7.016487.774419.67477
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005944
(v1.0)
Dennd5aNM_02149419347
27.678521.68618.0869
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005944
(v1.0)
Dennd5aNM_02149419347
110.52476.6799
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005944
(v1.0)
Dennd5aNM_02149419347
1.045465.70651
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005944
(v1.0)
Dennd5aNM_02149419347
1.784452.1711
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005944
(v1.0)
22115L0942A10-3Mm.21904Rab6ip119347
U029115NAP093670-001ORF37;Rab6ip1;TC853247Q621463.54943.63523.46133.67823.06573.36923.2921
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005944
(v1.0)
1424015_atMm.21904Dennd5aNM_021494.119347
138.2216.75373.0250245.375
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005944
(v1.0)
A_51_P494589Rab6ip1NM_02149419347
11P1.4890.157P
0005944
(v1.0)
A_52_P594750Rab6ip1NM_02149419347
11P0.01130.0161P
Proteome N/A