DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0005963
GeneDffa
SynonymsDFF35
Dff45
ICAD-L
ICAD-S
Desc.DNA fragmentation factor, alpha subunit
LocusNM_010044 chr4:148478262-148492237(+)
NM_001025296 chr4:148478262-148494759(+)
DB links


Entrez 13347
MGI 1196227
Ensembl ENSMUSG00000028974
Vega OTTMUSG00000010959
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2005889
(v2.0)
DffaNM_001025296,NM_010044,NR_10426313347
9.698333.18186.3100111.968510.81274.664854.975548.545168.46234.80905
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0005963
(v1.0)
Dffa13347
Major ZGA0.9573
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005889
(v2.0)
Dffa13347
691/4280.1779362/428-0.3569135/4281.9067328/4280.943366/428-0.6316373/428-0.7953
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2005889
(v2.0)
Dffa13347
268/1770.0852148/177-0.37235/1771.2077125/1770.820628/177-0.5854150/177-0.8318
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005889
(v2.0)
Dffa13347
71.799316842.74
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2005889
(v2.0)
Dffa13347
16.30065330.76
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005963
(v1.0)
DffaNM_001025296,NM_01004413347
3.3544.255488.904727.369943.50636
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0005963
(v1.0)
DffaNM_001025296,NM_01004413347
4.598385.4254711.32488.070874.12017
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0005963
(v1.0)
DffaNM_001025296,NM_01004413347
3.506923.449564.64282
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0005963
(v1.0)
DffaNM_001025296,NM_01004413347
3.42314.212756.38593
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0005963
(v1.0)
DffaNM_001025296,NM_01004413347
9.142479.18796
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0005963
(v1.0)
DffaNM_001025296,NM_01004413347
3.508953.402317.00387
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0005963
(v1.0)
DffaNM_001025296,NM_01004413347
8.244387.115975.91633
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0005963
(v1.0)
DffaNM_001025296,NM_01004413347
6.65226.06302
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0005963
(v1.0)
DffaNM_001025296,NM_01004413347
0.243315.91223
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0005963
(v1.0)
DffaNM_001025296,NM_01004413347
1.302591.2962
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0005963
(v1.0)
16206K0341E12-3Mm.41433Dffa13347
U019901NAP116812-1Fmr1;O54786U,F,22.58632.45482.41982.44582.52112.52652.4637
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0005963
(v1.0)
1450885_atMm.41433DffaNM_001025296.1,NM_010044.213347
00252.95079.3
0005963
(v1.0)
1457564_atMm.41433DffaNM_001025296.1,NM_010044.213347
158.60177.975209.550
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0005963
(v1.0)
A_51_P141190DffaNM_01004413347
11P1.1110.691P
Proteome N/A