DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0006187
GeneDnmt1
SynonymsCxxc9
Dnmt1o
MommeD2
MTase
Desc.DNA methyltransferase (cytosine-5) 1
LocusNM_010066 chr9:20711650-20757423(-)
NM_001199431 chr9:20711650-20757423(-)
NM_001199433 chr9:20711650-20757067(-)
NM_001199432 chr9:20711650-20764332(-)
DB links


Entrez 13433
MGI 94912
Ensembl ENSMUSG00000004099
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   2 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2006116
(v2.0)
Dnmt1NM_001199431,NM_001199432,NM_001199433,NM_01006613433
17.0299196.05658.322234.953528.540.034626.744971.101230.218329.7743
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0006187
(v1.0)
Dnmt113433
Maternal RNA0.99678
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2006116
(v2.0)
Dnmt113433
682/492-0.0416402/492-0.406780/4920.9633228/4920.220654/492-1.1155480/492-0.6334
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2006116
(v2.0)
Dnmt113433
319/1820.2953168/182-0.230376/1822.2669200/1821.45479/182-2.1607104/182-1.3937
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2006116
(v2.0)
Dnmt113433
70.558313950.76
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2006116
(v2.0)
Dnmt113433
18.42528421.93
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0006187
(v1.0)
Dnmt1NM_001199431,NM_001199432,NM_001199433,NM_01006613433
203.82140.568226.029119.779118.8908
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0006187
(v1.0)
Dnmt1FR160278,NM_001199431,NM_001199432,NM_001199433,NM_01006613433
3898.82441.646309.46198.937229.391
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0006187
(v1.0)
Dnmt1NM_001199431,NM_001199432,NM_001199433,NM_01006613433
213.1146.22844.2607
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0006187
(v1.0)
Dnmt1NM_001199431,NM_001199432,NM_001199433,NM_01006613433
208.0240.160852.7655
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0006187
(v1.0)
Dnmt1FR160278,NM_001199431,NM_001199432,NM_001199433,NM_01006613433
788.8151038.44
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0006187
(v1.0)
Dnmt1NM_001199431,NM_001199432,NM_001199433,NM_01006613433
213.2376.142757.8714
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0006187
(v1.0)
Dnmt1NM_001199431,NM_001199432,NM_001199433,NM_01006613433
24.098919.097520.9911
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0006187
(v1.0)
Dnmt1FR160278,NM_001199431,NM_001199432,NM_001199433,NM_01006613433
275.742294.452
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0006187
(v1.0)
Dnmt1NM_001199431,NM_001199432,NM_001199433,NM_01006613433
862.16312.433
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0006187
(v1.0)
Dnmt1NM_001199431,NM_001199432,NM_001199433,NM_01006613433
10.638929.5657
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0006187
(v1.0)
4902G0112B12-3Mm.7814Dnmt113433
U030563NAP121152-001Dnmt1;TC853311,TC853310P13864U,F,23.67983.71023.25043.41663.18913.23563.3523
0006187
(v1.0)
15678K0224A09-3Mm.7814Dnmt113433
U030563NAP056232-1Dnmt1;P13864U,F,23.29473.1643.01743.14233.193.14463.1322
0006187
(v1.0)
17956L0037B04-3Mm.7814Dnmt113433
U030563NAP121152-001Dnmt1;TC853311,TC853310P13864U,F,23.79713.76163.29663.55043.41713.443.4189
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0006187
(v1.0)
1422946_a_atMm.128580Dnmt1NM_001199433.1,NM_001199431.1,NM_010066.4,NM_001199432.113433
3190.4751368.325411.4154.1211.8
0006187
(v1.0)
1435122_x_atMm.128580Dnmt1NM_001199433.1,NM_001199431.1,NM_010066.4,NM_001199432.113433
3901.951802.35361.90239.95
0006187
(v1.0)
1447877_x_atMm.128580Dnmt1NM_001199433.1,NM_001199431.1,NM_010066.4,NM_001199432.113433
9008.552605.85571.5500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0006187
(v1.0)
A_51_P195573Dnmt1NM_01006613433
11P3.1550.0554P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0006187
(v1.0)
Dnmt113433
816144517.5807.5249