DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0006187

Gene

Dnmt1

Synonyms

Cxxc9
Dnmt1o
MommeD2
MTase

Description

DNA methyltransferase (cytosine-5) 1

Locus

NM_010066 UCSC: chr9:20711650-20757423(-) OLP: chr9:20711650-20757423(-)
NM_001199431 UCSC: chr9:20711650-20757423(-) OLP: chr9:20711650-20757423(-)
NM_001199433 UCSC: chr9:20711650-20757067(-) OLP: chr9:20711650-20757067(-)
NM_001199432 UCSC: chr9:20711650-20764332(-) OLP: chr9:20711650-20764332(-)

DB links

Entrez 13433
MGI 94912
Ensembl ENSMUSG00000004099

Feature

protein-coding

GO_BP

20 Terms

GO_MF

17 Terms

GO_CC

6 Terms

KEGG

2 Terms

see DBTMEE:2006116 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0006187 (v1.0)	Dnmt1	NM_001199431,NM_001199432,NM_001199433,NM_010066	13433	203.821	40.5682	26.0291	19.7791	18.8908

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0006187 (v1.0)	Dnmt1	NM_001199431,NM_001199432,NM_001199433,NM_010066	13433	213.114	6.228	44.2607

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0006187 (v1.0)	Dnmt1	NM_001199431,NM_001199432,NM_001199433,NM_010066	13433	208.02	40.1608	52.7655

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0006187 (v1.0)	Dnmt1	NM_001199431,NM_001199432,NM_001199433,NM_010066	13433	213.237	6.1427	57.8714

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0006187 (v1.0)	Dnmt1	NM_001199431,NM_001199432,NM_001199433,NM_010066	13433	24.0989	19.0975	20.9911

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0006187 (v1.0)	Dnmt1	NM_001199431,NM_001199432,NM_001199433,NM_010066	13433	862.163	12.433

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0006187 (v1.0)	Dnmt1	NM_001199431,NM_001199432,NM_001199433,NM_010066	13433	10.6389	29.5657

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0006187 (v1.0)	4902	G0112B12-3	Mm.7814	Dnmt1	13433	U030563	NAP121152-001	Dnmt1;	TC853311,TC853310	P13864	U,F,2	3.6798	3.7102	3.2504	3.4166	3.1891	3.2356	3.3523
0006187 (v1.0)	15678	K0224A09-3	Mm.7814	Dnmt1	13433	U030563	NAP056232-1	Dnmt1;		P13864	U,F,2	3.2947	3.164	3.0174	3.1423	3.19	3.1446	3.1322
0006187 (v1.0)	17956	L0037B04-3	Mm.7814	Dnmt1	13433	U030563	NAP121152-001	Dnmt1;	TC853311,TC853310	P13864	U,F,2	3.7971	3.7616	3.2966	3.5504	3.4171	3.44	3.4189

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0006187 (v1.0)	1422946_a_at	Mm.128580	Dnmt1	NM_001199433.1,NM_001199431.1,NM_010066.4,NM_001199432.1	13433	3190.48	1368.32	411.4	154.1	211.8
0006187 (v1.0)	1435122_x_at	Mm.128580	Dnmt1	NM_001199433.1,NM_001199431.1,NM_010066.4,NM_001199432.1	13433	3901.95	1802.35	361.9	0	239.95
0006187 (v1.0)	1447877_x_at	Mm.128580	Dnmt1	NM_001199433.1,NM_001199431.1,NM_010066.4,NM_001199432.1	13433	9008.55	2605.85	571.55	0	0

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0006187 (v1.0)	A_51_P195573	Dnmt1	NM_010066	13433	1	1	P	3.155	0.0554	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0006187 (v1.0)	Dnmt1	13433	81	61	44	517.5	807.5	249