DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0006234
GeneDpf3
Synonymscer-d4
CERD4
Desc.D4, zinc and double PHD fingers, family 3
LocusNM_001267625 chr12:84314738-84828686(-)
NM_001267626 chr12:84369998-84828686(-)
NM_058212 chr12:84369998-84828686(-)
DB links


Entrez 70127
MGI 1917377
Ensembl ENSMUSG00000021221
Vega OTTMUSG00000033729
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2006164
(v2.0)
Dpf3NM_001267625,NM_001267626,NM_05821270127
1.826439.048166.53737.940338.32740.3368090.041548273.78546.945290.35235
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0006234
(v1.0)
Dpf370127
Minor ZGA0.98967
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2006164
(v2.0)
Dpf370127
836/4250.4623612/4250.409445/4253.632934/4254.1106847/4253.04033135/4252.2809
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2006164
(v2.0)
Dpf370127
501/1880.8977309/1880.5981419/1884.67051959/1884.6942429/1883.21981629/1882.5095
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2006164
(v2.0)
Dpf370127
44.968424418.43
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2006164
(v2.0)
Dpf370127
8.54441784.8
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0006234
(v1.0)
Dpf3NM_05821270127
48.512454.97057.037396.849310.0381312
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0006234
(v1.0)
Dpf3FR298084,NM_05821270127
16.236819.99022.596953.908150
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0006234
(v1.0)
Dpf3NM_05821270127
50.72420.79915859.974
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0006234
(v1.0)
Dpf3NM_05821270127
49.511854.418665.258
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0006234
(v1.0)
Dpf3FR298084,NM_05821270127
20.296624.1195
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0006234
(v1.0)
Dpf3NM_05821270127
50.75360.78821271.5727
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0006234
(v1.0)
Dpf3NM_05821270127
6.515526.613285.78889
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0006234
(v1.0)
Dpf3FR298084,NM_05821270127
3.865933.79566
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0006234
(v1.0)
Dpf3NM_05821270127
25.78646.88825
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0006234
(v1.0)
Dpf3NM_05821270127
3.249174.14189
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0006234
(v1.0)
1450162_atMm.151308Dpf3NM_058212.170127
291.575182.85118.27500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0006234
(v1.0)
A_52_P684138Dpf3NM_05821270127
11P0.5620.183P
Proteome N/A