DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0007303
GeneFarp1
SynonymsCdep
Desc.FERM, RhoGEF (Arhgef) and pleckstrin domain protein 1 (chondrocyte-derived)
LocusNM_134082 chr14:121434796-121682948(+)
DB links


Entrez 223254
MGI 2446173
Ensembl ENSMUSG00000025555
Vega OTTMUSG00000026446
Featureprotein-coding
GO(BP)
  •   1 Terms
      negative regulation of phosphatase activity (GO:0010923)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2007223
(v2.0)
Farp1NM_134082223254
3.6000530.005741.583410.98345.953613.5450611.309949.18318.75792.51627
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0007303
(v1.0)
Farp1223254
Minor ZGA0.98999
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007223
(v2.0)
Farp1223254
963/5220.37660/5220.2218146/5221.7397476/5221.1943520/5222.04362804/5221.824
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007223
(v2.0)
Farp1223254
530/2090.8267343/2090.5962138/2092.9312414/2092.3036288/2092.49691500/2092.2386
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007223
(v2.0)
Farp1223254
57.247516634.49
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007223
(v2.0)
Farp1223254
11.48711310.17
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007303
(v1.0)
Farp1NM_134082223254
31.203628.76538.166574.120197.85385
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007303
(v1.0)
Farp1FR277670,NM_134082223254
398.299348.91392.689282.7901113.765
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0007303
(v1.0)
Farp1NM_134082223254
32.62621.3165731.3836
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0007303
(v1.0)
Farp1NM_134082223254
31.846428.476536.4295
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0007303
(v1.0)
Farp1FR277670,NM_134082223254
600.845498.066
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0007303
(v1.0)
Farp1NM_134082223254
32.64521.2985439.9546
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0007303
(v1.0)
Farp1NM_134082223254
7.560973.978216.08044
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0007303
(v1.0)
Farp1NM_134082223254
52.845691.1632
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0007303
(v1.0)
Farp1NM_134082223254
16.17745.43366
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0007303
(v1.0)
Farp1NM_134082223254
0.4048940.545498
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0007303
(v1.0)
6558H3028C10-3Mm.44250Farp1223254
U015989NAP121299-001TC930550,TC930549Q99KU3U,F3.14573.52393.12433.11842.28452.47942.9453
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0007303
(v1.0)
1452280_atMm.223980Farp1NM_134082.3223254
151.7184.725157.8500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0007303
(v1.0)
A_51_P332939Farp1AK034903223254
11P1.3410.209P
0007303
(v1.0)
A_52_P330395Farp1AK034903223254
11P1.2540.266P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0007303
(v1.0)
Farp1223254
401501