DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0007639
GeneFoxj3
SynonymsFhd6
Desc.forkhead box J3
LocusNM_172699 chr4:119212293-119301724(+)
DB links


Entrez 230700
MGI 2443432
Ensembl ENSMUSG00000032998
Vega OTTMUSG00000009437
Featureprotein-coding
GO(BP)
  •   9 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      pattern specification process (GO:0007389)
      embryo development (GO:0009790)
      tissue development (GO:0009888)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      organ development (GO:0048513)
      regulation of sequence-specific DNA binding transcription factor activity (GO:0051090)
GO(MF)
  •   8 Terms
      DNA binding (GO:0003677)
      double-stranded DNA binding (GO:0003690)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity (GO:0003705)
      transcription factor binding (GO:0008134)
      DNA binding, bending (GO:0008301)
      protein domain specific binding (GO:0019904)
      sequence-specific DNA binding (GO:0043565)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2007566
(v2.0)
Foxj3NM_001290696,NM_172699230700
6.9185197.044425.527262.41566.05289.6366610.3968446.18364.56979.36979
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0007639
(v1.0)
Foxj3230700
Minor ZGA0.91937
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007566
(v2.0)
Foxj3230700
692/4060.2559421/406-0.0637149/4062.1221322/4060.992449/406-0.9784300/406-1.0321
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007566
(v2.0)
Foxj3230700
399/1580.8197195/1580.1862144/1583.3704302/1582.247910/158-1.8241116/158-1.0355
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007566
(v2.0)
Foxj3230700
47.428512139.2
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007566
(v2.0)
Foxj3230700
11.05438313.32
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007639
(v1.0)
Foxj3NM_172699230700
204.234293.017194.95745.22867.19477
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007639
(v1.0)
Foxj3FR001655,FR391390,NM_172699230700
296.922332.582253.35555.204311.6794
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0007639
(v1.0)
Foxj3NM_172699230700
213.5452.52801319.688
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0007639
(v1.0)
Foxj3NM_172699230700
208.441290.075326.658
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0007639
(v1.0)
Foxj3FR001655,FR391390,NM_172699230700
604.4111071.8
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0007639
(v1.0)
Foxj3NM_172699230700
213.6692.49339358.268
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0007639
(v1.0)
Foxj3NM_172699230700
180.543.670144.5607
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0007639
(v1.0)
Foxj3FR001655,FR391390,NM_172699230700
58.505356.5671
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0007639
(v1.0)
Foxj3NM_172699230700
332.95250.994
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0007639
(v1.0)
Foxj3NM_172699230700
7.692536.69422
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0007639
(v1.0)
17298K0602A05-3Mm.31178C330039G02230700
U004742NAP003880-002TC805703U,F,22.64932.57452.47682.41872.24492.20642.2668
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0007639
(v1.0)
1435362_atMm.259227Foxj3NM_172699.2230700
2257.5752061.954222.775347.475353.05
0007639
(v1.0)
1438220_atMm.259227Foxj3NM_172699.2230700
284.225402.6751367.725038.8
0007639
(v1.0)
1459055_atMm.259227Foxj3NM_172699.2230700
001229.300
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0007639
(v1.0)
A_52_P508030Foxj3NM_172699230700
11P0.8650.385P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0007639
(v1.0)
Foxj3230700
010020