DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0007648
GeneFoxn3
SynonymsChes1
Ches1l
HTLFL1
Desc.forkhead box N3
LocusNM_183186 chr12:100433304-100688284(-)
DB links


Entrez 71375
MGI 1918625
Ensembl ENSMUSG00000033713
Vega OTTMUSG00000042153
Featureprotein-coding
GO(BP)
  •   9 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      cell cycle (GO:0007049)
      pattern specification process (GO:0007389)
      embryo development (GO:0009790)
      tissue development (GO:0009888)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      regulation of sequence-specific DNA binding transcription factor activity (GO:0051090)
GO(MF)
  •   8 Terms
      DNA binding (GO:0003677)
      double-stranded DNA binding (GO:0003690)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity (GO:0003705)
      protein C-terminus binding (GO:0008022)
      transcription factor binding (GO:0008134)
      DNA binding, bending (GO:0008301)
      sequence-specific DNA binding (GO:0043565)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2007575
(v2.0)
Foxn3NM_18318671375
4.0170229.05355.808530.864540.37862.9341218.029157.310944.22622.54881
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0007648
(v1.0)
Foxn371375
1-Cell Transient0.90859
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007575
(v2.0)
Foxn371375
646/4520.0024444/452-0.14168/452-2.087431/452-2.496938/452-1.4902273/452-1.322
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007575
(v2.0)
Foxn371375
249/184-0.076161/184-0.3075/184-1.42979/184-2.88999/184-2.176193/184-1.5683
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007575
(v2.0)
Foxn371375
105.321811194.88
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007575
(v2.0)
Foxn371375
33.97573791.83
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007648
(v1.0)
Foxn3NM_18318671375
30.202638.713422.993128.008312.6748
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007648
(v1.0)
Foxn3NM_18318671375
39.798591.877288.781129.435613.1999
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0007648
(v1.0)
Foxn3NM_18318671375
31.57961.4690742.2372
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0007648
(v1.0)
Foxn3NM_18318671375
30.824838.324742.4929
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0007648
(v1.0)
Foxn3NM_18318671375
97.4943101.79
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0007648
(v1.0)
Foxn3NM_18318671375
31.59791.4489446.6048
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0007648
(v1.0)
Foxn3NM_18318671375
21.288127.043130.6224
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0007648
(v1.0)
Foxn3NM_18318671375
23.755829.8
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0007648
(v1.0)
Foxn3NM_18318671375
31.507417.464
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0007648
(v1.0)
Foxn3NM_18318671375
2.260413.27465
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0007648
(v1.0)
2592C0340G04-3Mm.87594Ches171375
U034255NAP094429-001Ches1;TC799255Q9CU83U,F3.07613.21882.59012.77512.72862.87562.819
0007648
(v1.0)
9001H3075C04-3Mm.87594Ches171375
U034255NAP094429-001Ches1;TC799255Q9CU83U,F2.87582.83442.60132.98482.70852.72772.6832
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0007648
(v1.0)
1434002_atMm.392143Foxn371375
274.8750246.9587.325359.5
0007648
(v1.0)
1436925_atMm.392143Foxn371375
319.1415.525238.425265.550
0007648
(v1.0)
1438255_atMm.392143Foxn371375
499.55838.75388.3410.825201.25
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0007648
(v1.0)
A_51_P172344Ches1NM_18318671375
11P0.5210.103P
0007648
(v1.0)
A_52_P289835Ches1NM_18318671375
11P0.3290.0572P
Proteome N/A