DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0007659
GeneFoxr1
SynonymsFoxn5
LOC382074
Desc.forkhead box R1
LocusNM_001033469 chr9:44242317-44248951(-)
DB links


Entrez 382074
MGI 2685961
Ensembl ENSMUSG00000074397
Featureprotein-coding
GO(BP)
  •   8 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      pattern specification process (GO:0007389)
      embryo development (GO:0009790)
      tissue development (GO:0009888)
      organ development (GO:0048513)
      regulation of sequence-specific DNA binding transcription factor activity (GO:0051090)
GO(MF)
  •   7 Terms
      DNA binding (GO:0003677)
      double-stranded DNA binding (GO:0003690)
      sequence-specific DNA binding transcription factor activity (GO:0003700)
      RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity (GO:0003705)
      transcription factor binding (GO:0008134)
      DNA binding, bending (GO:0008301)
      sequence-specific DNA binding (GO:0043565)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2007586
(v2.0)
Foxr1NM_001033469382074
0.54523816.700714.956236.834113.19181.02744019.354513.12350.764174
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0007659
(v1.0)
Foxr1382074
2-Cell Transient0.95689
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007586
(v2.0)
Foxr1382074
610/4270.0018440/427-0.0728107/4271.5774399/4271.2286153/4270.57251019/4270.6543
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007586
(v2.0)
Foxr1382074
293/1590.367207/1590.262990/1592.6899341/1592.4136100/1591.3658524/1591.1163
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007586
(v2.0)
Foxr1382074
65.493410761.21
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007586
(v2.0)
Foxr1382074
18.20495731.94
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007659
(v1.0)
Foxr1NM_001033469382074
17.363710.305727.41929.171580
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007659
(v1.0)
Foxr1NM_001033469382074
50.1122.383279.111233.68180
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0007659
(v1.0)
Foxr1NM_001033469382074
18.15530.19939911.2437
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0007659
(v1.0)
Foxr1NM_001033469382074
17.721410.202214.3149
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0007659
(v1.0)
Foxr1NM_001033469382074
22.721531.5792
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0007659
(v1.0)
Foxr1NM_001033469382074
18.16590.19666815.7001
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0007659
(v1.0)
Foxr1NM_001033469382074
25.38598.855539.10199
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0007659
(v1.0)
Foxr1NM_001033469382074
16.293916.2371
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0007659
(v1.0)
Foxr1NM_001033469382074
2.700099.08122
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0007659
(v1.0)
Foxr1NM_001033469382074
2.003010.996587
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome N/A