DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0007799
GeneGabpb1
SynonymsBABPB2
E4TF1
E4TF1-47
E4TF1-53
E4Tf1B
GABPB1-1
GABPB1-2
NRF2B1
NRF2B2
Desc.GA repeat binding protein, beta 1
LocusNM_207669 chr2:126454643-126501328(-)
NM_001271467 chr2:126454643-126501328(-)
NM_001271468 chr2:126454643-126501328(-)
NM_001271469 chr2:126454643-126501328(-)
NM_010249 chr2:126464755-126501328(-)
NR_073183 chr2:126464755-126501328(-)
NM_001271470 chr2:126464755-126502073(-)
NM_001271492 chr2:126473484-126501328(-)
DB links


Entrez 14391
MGI 95611
Ensembl ENSMUSG00000027361
Vega OTTMUSG00000015863
Featureprotein-coding
GO(BP)
  •   3 Terms
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
GO(MF)
  •   2 Terms
      transcription regulatory region DNA binding (GO:0044212)
      protein heterodimerization activity (GO:0046982)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2007727
(v2.0)
Gabpb1NM_001271467,NM_001271468,NM_001271469,NM_001271470,NM_001271492,NM_010249,NM_207669,NR_07318314391
12.69648.247862.017353.162449.187215.93310.684565.225860.316.2546
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0007799
(v1.0)
Gabpb114391
Minor ZGA0.99369
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007727
(v2.0)
Gabpb114391
883/3660.7561579/3660.5443812/3664.70542436/3664.056610/366-3.0148115/366-2.2546
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007727
(v2.0)
Gabpb114391
547/1701.1685325/1700.815705/1705.55572025/1704.88516/170-2.579269/170-1.8773
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007727
(v2.0)
Gabpb114391
37.757815025.17
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007727
(v2.0)
Gabpb114391
12.386212110.24
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007799
(v1.0)
Gabpb1NM_010249,NM_20766914391
54.188146.277641.739536.36617.54607
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007799
(v1.0)
Gabpb1FR368118,NM_010249,NM_20766914391
201.329149.20999.9505120.14226.6594
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0007799
(v1.0)
Gabpb1NM_010249,NM_20766914391
56.65864.8502150.4899
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0007799
(v1.0)
Gabpb1NM_010249,NM_20766914391
55.304445.81350.5071
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0007799
(v1.0)
Gabpb1FR368118,NM_010249,NM_20766914391
466.917504.066
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0007799
(v1.0)
Gabpb1NM_010249,NM_20766914391
56.69154.7837855.3945
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0007799
(v1.0)
Gabpb1NM_010249,NM_20766914391
38.644335.112944.6337
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0007799
(v1.0)
Gabpb1FR368118,NM_010249,NM_20766914391
78.5347106.56
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0007799
(v1.0)
Gabpb1NM_010249,NM_20766914391
24.734135.0851
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0007799
(v1.0)
Gabpb1NM_010249,NM_20766914391
10.878519.7818
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0007799
(v1.0)
8556H3068B09-3Gabpb114391
U040971NAP094734-001Gabpb1;TC858501Q00420U,F,22.86322.86252.68612.70712.47832.49112.513
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0007799
(v1.0)
1419761_a_atMm.293266Gabpb1NM_207669.1,NM_010249.114391
452.675561.8907.05429.150
0007799
(v1.0)
1436232_a_atMm.293266Gabpb1NM_207669.1,NM_010249.114391
51.799.3576.05046.475
Agilent44K N/A
Proteome N/A