DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0007892

Gene

Gatad2a

Synonyms

Description

GATA zinc finger domain containing 2A

Locus

NM_001113345 UCSC: chr8:72430968-72520278(-) OLP: chr8:72430968-72520278(-)
NM_145596 UCSC: chr8:72430968-72520278(-) OLP: chr8:72430968-72520278(-)
NM_001113346 UCSC: chr8:72430968-72498282(-) OLP: chr8:72430968-72498282(-)

DB links

Entrez 234366
MGI 2384585
Ensembl ENSMUSG00000036180

Feature

protein-coding

GO_BP

9 Terms

GO_MF

2 Terms

GO_CC

2 Terms

KEGG

see DBTMEE:2007824 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0007892 (v1.0)	Gatad2a	NM_001113345,NM_001113346,NM_145596	234366	56.1166	83.994	43.7115	22.5883	13.3315

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0007892 (v1.0)	Gatad2a	NM_001113345,NM_001113346,NM_145596	234366	58.6751	10.2914	91.6393

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0007892 (v1.0)	Gatad2a	NM_001113345,NM_001113346,NM_145596	234366	57.2727	83.1506	150.508

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0007892 (v1.0)	Gatad2a	NM_001113345,NM_001113346,NM_145596	234366	58.7092	10.1504	165.072

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0007892 (v1.0)	Gatad2a	NM_001113345,NM_001113346,NM_145596	234366	40.47	21.8099	25.3816

Illumina_Oo_2C_FPKM_gene_guided

N/A

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0007892 (v1.0)	Gatad2a	NM_001113345,NM_001113346,NM_145596	234366	49.1877	52.66

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0007892 (v1.0)	1104	C0178D07-3	Mm.21919	BC031407	234366	U029905	NAP096533-001	BC031407;	TC825315,TC825314		U,F,2	3.7373	3.6525	3.1706	3.2427	2.9496	3.0982	3.0089

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0007892 (v1.0)	1423992_at	Mm.270044	Gatad2a	NM_145596.3,NM_001113345.1,NM_001113346.1	234366	366.275	523.35	365	230.725	192
0007892 (v1.0)	1455505_at	Mm.270044	Gatad2a	NM_145596.3,NM_001113345.1,NM_001113346.1	234366	27.65	38.45	39.575	0	0

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0007892 (v1.0)	A_52_P580458	Gatad2a	NM_145596	234366	1	1	P	1.467	0.162	P
0007892 (v1.0)	A_52_P594627	Gatad2a	NM_145596	234366	1	1	P	1.382	0.272	P

N/A