DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0007893

Gene

Gatad2b

Synonyms

p66beta

Description

GATA zinc finger domain containing 2B

Locus

NM_139304 UCSC: chr3:90145576-90162042(+) OLP: chr3:90145576-90162042(+)

DB links

Entrez 229542
MGI 2443225
Ensembl ENSMUSG00000042390

Feature

protein-coding

GO_BP

2 Terms

GO_MF

4 Terms

GO_CC

1 Terms

KEGG

see DBTMEE:2007825 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0007893 (v1.0)	Gatad2b	NM_139304	229542	121.289	63.0122	34.5525	24.5767	5.17493

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0007893 (v1.0)	Gatad2b	NM_139304	229542	126.819	2.52675	68.7477

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0007893 (v1.0)	Gatad2b	NM_139304	229542	123.787	62.3795	77.7612

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0007893 (v1.0)	Gatad2b	NM_139304	229542	126.892	2.49214	85.2858

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0007893 (v1.0)	Gatad2b	NM_139304	229542	31.9903	23.7297	29.3627

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0007893 (v1.0)	Gatad2b	NM_139304	229542	331.625	71.1493

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0007893 (v1.0)	Gatad2b	NM_139304	229542	63.8551	64.1509

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0007893 (v1.0)	4935	G0115E06-3	Mm.103389	LOC229542	229542	U003493	NAP081688-1		TC865715,TC860626		U,F,2	3.126	3.0262	2.7953	2.9256	2.5784	2.6637	2.7372
0007893 (v1.0)	12969	H3156A05-3	Mm.103389	LOC229542	229542	U003493	NAP050110-1		TC865716		U,F,2	3.0114	2.8486	2.7269	2.7217	2.3941	2.527	2.3911
0007893 (v1.0)	20930	L0819G02-3		LOC229542	229542	U003493	NAP094891-001		TC805535		U,F,2	3.4136	3.3072	2.9767	3.1195	2.7303	2.8249	2.6955

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0007893 (v1.0)	1425075_at	Mm.270999	Gatad2b	NM_139304.1	229542	219.325	482.025	0	0	0
0007893 (v1.0)	1437474_at	Mm.270999	Gatad2b	NM_139304.1	229542	501.4	827.5	347.55	0	0

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0007893 (v1.0)	A_52_P494115	Gatad2b	NM_139304	229542	1	1	P	0.632	0.141	P
0007893 (v1.0)	A_52_P582601	Gatad2b	AK173113	229542	1	1	P	1.453	0.166	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0007893 (v1.0)	Gatad2b	229542	0	1	0	0	2	0