DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0007993
GeneGga3
Synonyms
Desc.golgi associated, gamma adaptin ear containing, ARF binding protein 3
LocusNM_173048 chr11:115445569-115465230(-)
NM_001252067 chr11:115445569-115465230(-)
DB links


Entrez 260302
MGI 2384159
Ensembl ENSMUSG00000020740
Vega OTTMUSG00000003472
Featureprotein-coding
GO(BP)
GO(MF)
  •   1 Terms
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2007926
(v2.0)
Gga3NM_001252067,NM_173048260302
7.7705535.297337.465618.36415.6478510.4214.3294439.75427.313339.70785
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0007993
(v1.0)
Gga3260302
Maternal RNA0.89483
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007926
(v2.0)
Gga3260302
1036/5340.4426554/534-0.0631031/5344.51922337/5343.45495/534-4.4292134/534-2.5804
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2007926
(v2.0)
Gga3260302
584/2200.8926317/2200.4092931/2205.60641963/2204.47312/220-4.165771/220-2.207
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007926
(v2.0)
Gga3260302
107.798320253.37
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2007926
(v2.0)
Gga3260302
27.491411723.5
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007993
(v1.0)
Gga3NM_173048260302
36.802425.835313.56133.821763.01687
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0007993
(v1.0)
Gga3NM_025305,NM_173048260302
678.022585.489396.82882.614670.6962
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0007993
(v1.0)
Gga3NM_173048260302
38.48022.8499628.1868
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0007993
(v1.0)
Gga3NM_173048260302
37.560525.575929.5504
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0007993
(v1.0)
Gga3NM_025305,NM_173048260302
408.395431.394
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0007993
(v1.0)
Gga3NM_173048260302
38.50262.8109332.4099
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0007993
(v1.0)
Gga3NM_173048260302
12.55563.690064.91195
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0007993
(v1.0)
Gga3NM_173048260302
50.540374.0313
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0007993
(v1.0)
Gga3NM_173048260302
18.993118.7961
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0007993
(v1.0)
Gga3NM_173048260302
22.69945.62251
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0007993
(v1.0)
18391L0205B12-3Mm.29571Gga3260302
U033624NAP000845-001TC793849U,F,23.87013.98293.44023.64573.44423.55263.5207
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0007993
(v1.0)
1438008_atMm.119479Gga3NM_173048.2260302
655.5727.1250329.375465.825
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0007993
(v1.0)
A_51_P502443Gga3BC085617260302
11P1.1120.482P
0007993
(v1.0)
A_52_P639424Gga3NM_173048260302
11P0.6960.172P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0007993
(v1.0)
Gga3260302
242352