DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0009456
GeneGpcpd1
SynonymsPrei4
Desc.glycerophosphocholine phosphodiesterase GDE1 homolog (S. cerevisiae)
LocusNM_028802 chr2:132354819-132403984(-)
NM_001042671 chr2:132354819-132403984(-)
NM_001042672 chr2:132358461-132403984(-)
DB links


Entrez 74182
MGI 104898
Ensembl ENSMUSG00000027346
Vega OTTMUSG00000015660
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2009336
(v2.0)
Gpcpd1NM_001042672,NM_001291050,NM_001291051,NM_001291052,NM_027096,NM_02880274182
9.0328126.997443.638260.628980.84235.826035.4554435.857472.84454.24325
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0009456
(v1.0)
Gpcpd174182
MGA0.94484
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009336
(v2.0)
Gpcpd174182
609/3930.1188374/393-0.1872161/3932.2787568/3931.85638/393-1.2904274/393-1.1154
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009336
(v2.0)
Gpcpd174182
302/1710.3061173/171-0.0988133/1713.1504381/1712.46989/171-2.072893/171-1.4631
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009336
(v2.0)
Gpcpd174182
69.980212058.32
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009336
(v2.0)
Gpcpd174182
25.82927335.38
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0009456
(v1.0)
Gpcpd1NM_001042671,NM_001042672,NM_02880274182
27.716329.768644.085155.3583.78876
SOLiD_NMNR_Oo-4C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0009456
(v1.0)
Gpcpd1NM_001042671,NM_001042672,NM_02880274182
28.983.1973432.4782
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0009456
(v1.0)
Gpcpd1NM_001042671,NM_001042672,NM_02880274182
28.287329.469725.9336
SOLiD_NMNR_Partheno1C_FPKM_gene_guided N/A
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0009456
(v1.0)
Gpcpd1NM_001042671,NM_001042672,NM_02880274182
28.99683.1535428.4431
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0009456
(v1.0)
Gpcpd1NM_001042671,NM_001042672,NM_02880274182
40.81653.450449.3988
SOLiD_NMNR_Partheno4C_FPKM_gene_guided N/A
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0009456
(v1.0)
Gpcpd1NM_001042671,NM_001042672,NM_02880274182
13.392242.4029
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0009456
(v1.0)
Gpcpd1NM_001042671,NM_001042672,NM_02880274182
6.583929.84998
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0009456
(v1.0)
9683H3085A01-3Mm.286972310032D16Rik74182
U023395NAP002483-0012310032D16Rik;TC937277,TC927246,TC814850,TC814847,TC814846Q9D759U,F,23.32623.16483.03463.47453.21273.30843.1109
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0009456
(v1.0)
1429144_atMm.211211Gpcpd1NM_001042671.1,NM_028802.2,NM_001042672.174182
264.025283.675535.35456.35281.75
0009456
(v1.0)
1437953_atMm.211211Gpcpd1NM_001042671.1,NM_028802.2,NM_001042672.174182
161.45202.425242.825242.5124.875
0009456
(v1.0)
1429639_atMm.211211Gpcpd1NM_001042671.1,NM_028802.2,NM_001042672.174182
044115.15272.325238.875
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0009456
(v1.0)
A_51_P4647912310032D16RikNM_02880274182
11P0.6890.168P
0009456
(v1.0)
A_52_P4700172310032D16RikNM_02880274182
11P0.7890.255P
Proteome N/A