DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0009912
GeneHcfc1
SynonymsHCF-1
HCF1
VP16 accessory protein
Desc.host cell factor C1
LocusNM_008224 chrX:71188134-71211654(-)
DB links


Entrez 15161
MGI 105942
Ensembl ENSMUSG00000031386
Vega OTTMUSG00000017652
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2009795
(v2.0)
Hcfc1NM_00822415161
12.34264.161835.151347.593839.9926726.36428.992778.0108913.732324.9989
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0009912
(v1.0)
Hcfc115161
MGA0.98012
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009795
(v2.0)
Hcfc115161
428/2480.2734256/248-0.0701267/2483.644760/2482.93438/248-2.750590/248-2.0434
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009795
(v2.0)
Hcfc115161
252/1100.678299/110-0.2656261/1104.7022720/1104.01111/110-3.777220/110-2.9665
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009795
(v2.0)
Hcfc115161
31.748615320.75
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009795
(v2.0)
Hcfc115161
11.00031318.4
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0009912
(v1.0)
Hcfc1NM_00822415161
4.30233.553945.613786.915586.10063
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0009912
(v1.0)
Hcfc1NM_00822415161
92.064980.617893.4101147.819105.681
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0009912
(v1.0)
Hcfc1NM_00822415161
4.498454.53033.87743
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0009912
(v1.0)
Hcfc1NM_00822415161
4.390943.518265.90663
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0009912
(v1.0)
Hcfc1NM_00822415161
31.033746.179
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0009912
(v1.0)
Hcfc1NM_00822415161
4.501074.468266.47819
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0009912
(v1.0)
Hcfc1NM_00822415161
5.197496.677269.43829
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0009912
(v1.0)
Hcfc1NM_00822415161
102.498151.54
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0009912
(v1.0)
Hcfc1NM_00822415161
6.3461316.7229
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0009912
(v1.0)
Hcfc1NM_00822415161
4.418624.93633
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0009912
(v1.0)
572C0118F03-3Mm.203516AW060991103015
U039463NAP031597-1Hcfc1;TC904391,TC904389Q611913.34563.30123.36243.71793.55643.55363.6947
0009912
(v1.0)
3207C0619D04-3Mm.57203Hcfc115161
Hcfc12.51972.57932.72362.63232.42722.58392.4852
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0009912
(v1.0)
1433736_atMm.485413Hcfc1NM_008224.315161
00115.525195.75133.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0009912
(v1.0)
A_51_P104757Hcfc1NM_00822415161
11P2.5210.0707P
Proteome N/A