DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0009925
GeneHdac1
SynonymsHD1
MommeD5
RPD3
Desc.histone deacetylase 1
LocusNM_008228 chr4:129193348-129219890(-)
DB links


Entrez 433759
MGI 108086
Ensembl ENSMUSG00000028800
Vega OTTMUSG00000009661
Featureprotein-coding
GO(BP)
  •   30 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      protein deacetylation (GO:0006476)
      endoderm development (GO:0007492)
      positive regulation of cell proliferation (GO:0008284)
      negative regulation of cell proliferation (GO:0008285)
      epidermal cell differentiation (GO:0009913)
      positive regulation of receptor biosynthetic process (GO:0010870)
      chromatin modification (GO:0016568)
      histone deacetylation (GO:0016575)
      hippocampus development (GO:0021766)
      neuron differentiation (GO:0030182)
      cellular response to oxidative stress (GO:0034599)
      odontogenesis of dentin-containing tooth (GO:0042475)
      embryonic digit morphogenesis (GO:0042733)
      negative regulation of apoptotic process (GO:0043066)
      negative regulation of neuron apoptotic process (GO:0043524)
      negative regulation by host of viral transcription (GO:0043922)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      positive regulation of transcription, DNA-dependent (GO:0045893)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of oligodendrocyte differentiation (GO:0048714)
      negative regulation of androgen receptor signaling pathway (GO:0060766)
      hair follicle placode formation (GO:0060789)
      eyelid development in camera-type eye (GO:0061029)
      fungiform papilla formation (GO:0061198)
      histone H3 deacetylation (GO:0070932)
      histone H4 deacetylation (GO:0070933)
      negative regulation of canonical Wnt receptor signaling pathway (GO:0090090)
GO(MF)
  •   22 Terms
GO(CC)
KEGG
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2009808
(v2.0)
Hdac1NM_008228433759
32.37363.521736.66749153.094224.179173.12155.25794.06728227.066176.942
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0009925
(v1.0)
Hdac1433759
Major ZGA0.98556
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009808
(v2.0)
Hdac1433759
612/4220.0234391/422-0.2257131/4221.8835344/4221.032133/422-1.59219/422-1.5391
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009808
(v2.0)
Hdac1433759
311/1700.3567181/170-0.0256120/1703.0111317/1702.21369/170-2.064659/170-2.098
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009808
(v2.0)
Hdac1433759
63.319613447.25
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009808
(v2.0)
Hdac1433759
14.73848118.2
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0009925
(v1.0)
Hdac1NM_008228433759
3.661134.62486114.042155.61739.0026
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0009925
(v1.0)
Hdac1NM_008228433759
0.3415374.8221825.891240.27718.77816
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0009925
(v1.0)
Hdac1NM_008228433759
3.8280411.83945.04582
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0009925
(v1.0)
Hdac1NM_008228433759
3.736554.578423.02698
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0009925
(v1.0)
Hdac1NM_008228433759
0.3498280.541555
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0009925
(v1.0)
Hdac1NM_008228433759
3.8302711.67723.31989
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0009925
(v1.0)
Hdac1NM_008228433759
105.585150.255156.949
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0009925
(v1.0)
Hdac1NM_008228433759
37.738736.8943
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0009925
(v1.0)
Hdac1NM_008228433759
0.98648871.241
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0009925
(v1.0)
Hdac1NM_008228433759
0.4143970.946906
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0009925
(v1.0)
11397H3114E11-3Hdac115181
U025556NAP093601-001TC814268,TC814267,TC814262,TC814261O09106U,F,22.08312.56572.89893.53653.51833.73093.5246
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0009925
(v1.0)
1448246_atMm.391033Hdac1433759
123.7750835.4251660.2721.825
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0009925
(v1.0)
A_51_P507380Hdac1NM_008228433759
11P0.01790.0159P
Proteome N/A