DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0009932
GeneHdac6
SynonymsmHDA2
Sfc6
Desc.histone deacetylase 6
LocusNM_001130416 chrX:7507248-7525015(-)
NM_010413 chrX:7507248-7525015(-)
DB links


Entrez 15185
MGI 1333752
Ensembl ENSMUSG00000031161
Vega OTTMUSG00000017170
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2009815
(v2.0)
Hdac6NM_001130416,NM_01041315185
83.842713.949.3320725.313320.87323.628314.95127.2996723.272617.7235
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0009932
(v1.0)
Hdac615185
Major ZGA0.97112
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009815
(v2.0)
Hdac615185
343/2380.0144221/238-0.222160/2381.5652183/2380.94498/238-2.6921146/238-1.2955
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009815
(v2.0)
Hdac615185
148/1030.0175/103-0.567156/1032.5868160/1031.94091/103-3.685930/103-2.3218
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009815
(v2.0)
Hdac615185
100.374116859.75
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009815
(v2.0)
Hdac615185
21.41418425.49
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0009932
(v1.0)
Hdac6NM_001130416,NM_01041315185
14.48326.4726418.827414.470210.5092
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0009932
(v1.0)
Hdac6NM_001130416,NM_01041315185
876.204308.85809.076745.63523.487
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0009932
(v1.0)
Hdac6NM_001130416,NM_01041315185
15.143530.66187.06179
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0009932
(v1.0)
Hdac6NM_001130416,NM_01041315185
14.78166.407645.41969
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0009932
(v1.0)
Hdac6NM_001130416,NM_01041315185
163.80792.5141
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0009932
(v1.0)
Hdac6NM_001130416,NM_01041315185
15.152330.24185.94413
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0009932
(v1.0)
Hdac6NM_001130416,NM_01041315185
17.431213.971516.1337
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0009932
(v1.0)
Hdac6NM_001130416,NM_01041315185
351.568488.046
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0009932
(v1.0)
Hdac6NM_001130416,NM_01041315185
3.171574.13262
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0009932
(v1.0)
Hdac6NM_001130416,NM_01041315185
5.906131.62155
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0009932
(v1.0)
21848L0919C12-3Mm.29854Hdac615185
U039235NAP096746-001Hdac6;TC805231,TC805230Q9Z2V53.51383.36523.38453.66664.00053.64933.8747
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0009932
(v1.0)
1448928_atMm.29854Hdac6NM_010413.3,NM_001130416.115185
00180.17500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0009932
(v1.0)
A_51_P449361Hdac6NM_01041315185
11P1.3940.193P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0009932
(v1.0)
Hdac615185
220230