DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0009939
GeneHdgf
SynonymsD3Ertd299e
Desc.hepatoma-derived growth factor
LocusNM_008231 chr3:87710243-87720054(+)
DB links


Entrez 15191
MGI 1194494
Ensembl ENSMUSG00000004897
Vega OTTMUSG00000027208
Featureprotein-coding
GO(BP)
  •   6 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      transcription, DNA-dependent (GO:0006351)
      regulation of transcription, DNA-dependent (GO:0006355)
      cellular process (GO:0009987)
      protein localization to nucleus (GO:0034504)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2009822
(v2.0)
HdgfNM_00823115191
181.7160.698798.4021311.632693.899325.674134.881113.052642.903373.344
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0009939
(v1.0)
Hdgf15191
MGA0.95262
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009822
(v2.0)
Hdgf15191
675/4280.1441386/428-0.2645207/4282.5197474/4281.473121/428-2.2382190/428-1.7629
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009822
(v2.0)
Hdgf15191
347/1670.5396184/1670.0235169/1673.5256366/1672.44564/167-3.039561/167-2.0255
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009822
(v2.0)
Hdgf15191
45.150110841.81
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009822
(v2.0)
Hdgf15191
14.41557319.75
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0009939
(v1.0)
HdgfNM_00823115191
63.114368.3405232.086480.35895.8017
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0009939
(v1.0)
HdgfNM_00823115191
87.878685.1439276.841632.895128.647
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0009939
(v1.0)
HdgfNM_00823115191
65.991866.453374.561
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0009939
(v1.0)
HdgfNM_00823115191
64.414567.654383.8742
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0009939
(v1.0)
HdgfNM_00823115191
63.812179.1124
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0009939
(v1.0)
HdgfNM_00823115191
66.030265.543191.9904
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0009939
(v1.0)
HdgfNM_00823115191
214.875463.805444.638
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0009939
(v1.0)
HdgfNM_00823115191
626.073579.943
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0009939
(v1.0)
HdgfNM_00823115191
59.8281133.607
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0009939
(v1.0)
HdgfNM_00823115191
35.163347.3683
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0009939
(v1.0)
3395C0652H10-3Mm.1141Hdgf15191
U042446NAP093396-001Hdgf;TC835855,TC835849,TC835842,TC835841P51859U,F,23.23853.32543.56253.36593.25753.35413.3404
0009939
(v1.0)
7325H3046C06-3Hdgf15191
U042446NAP093396-001Hdgf;TC835849,TC835842P51859U,F,23.51823.57053.68974.08683.894.04353.8215
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0009939
(v1.0)
1415888_atMm.292208HdgfNM_008231.415191
166.175423.85509.951745.3251135.75
0009939
(v1.0)
1419964_s_atMm.292208HdgfNM_008231.415191
289.8164.875921.452198.61858.175
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0009939
(v1.0)
A_51_P425080HdgfNM_00823115191
11P1.9250.0963P
0009939
(v1.0)
A_52_P339791HdgfNM_00823115191
11P0.3550.0902P
Proteome N/A