DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010079
GeneHist1h3a
Synonyms
Desc.histone cluster 1, H3a
LocusNM_013550 chr13:23853722-23854255(-)
DB links


Entrez 360198
MGI 2668828
Ensembl ENSMUSG00000069265
Vega OTTMUSG00000000578
Featureprotein-coding
GO(BP)
  •   1 Terms
GO(MF)
GO(CC)
KEGG
  •   1 Terms
      Systemic lupus erythematosus (mmu05322)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2009960
(v2.0)
Hist1h3aNM_013550360198
0.66621740.436642.480410.841813.12476.2254688.695897.672831.51765.9138
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010079
(v1.0)
Hist1h3a360198
Maternal RNA0.97674
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009960
(v2.0)
Hist1h3a360198
772/4140.3853512/4140.1899587/4144.06562757/4144.0585205/4141.03641029/4140.7128
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2009960
(v2.0)
Hist1h3a360198
373/1800.5359214/1800.1327476/1804.91291991/1804.7794119/1801.4398568/1801.0544
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009960
(v2.0)
Hist1h3a360198
23.653317413.59
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2009960
(v2.0)
Hist1h3a360198
6.89951345.15
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010079
(v1.0)
Hist1h3aNM_013550360198
38.113726.86927.311228.2680258.6698
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010079
(v1.0)
Hist1h3aFR005666,FR213842,FR338740,NM_013550,NM_175653,NM_178205,NM_178207360198
29.576124.902210.52512.7565160.305
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010079
(v1.0)
Hist1h3aNM_013550360198
39.85130.22011829.3149
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010079
(v1.0)
Hist1h3aNM_013550360198
38.898926.599466.2725
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010079
(v1.0)
Hist1h3aFR005666,FR213842,FR338740,NM_013550,NM_175653,NM_178205,NM_178207360198
25.279335.6801
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010079
(v1.0)
Hist1h3aNM_013550360198
39.87450.21710372.6854
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010079
(v1.0)
Hist1h3aNM_013550360198
6.769057.983119.423
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010079
(v1.0)
Hist1h3aFR005666,FR213842,FR338740,NM_013550,NM_175653,NM_178205,NM_178207360198
12.61835.5972
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010079
(v1.0)
Hist1h3aNM_013550360198
1.930452.42114
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010079
(v1.0)
Hist1h3aNM_013550360198
0.3157270.162906
NIA60mer N/A
MOE430 N/A
Agilent44K N/A
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0010079
(v1.0)
Hist1h3a360198
100200