DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010126
GeneHmbs
SynonymsPBGD
porphobilinogen deaminase
Ups
Uros1
Desc.hydroxymethylbilane synthase
LocusNM_013551 chr9:44144431-44152311(-)
NM_001110251 chr9:44144431-44150464(-)
DB links


Entrez 15288
MGI 96112
Ensembl ENSMUSG00000032126
Featureprotein-coding
GO(BP)
  •   4 Terms
      porphyrin-containing compound biosynthetic process (GO:0006779)
      heme biosynthetic process (GO:0006783)
      peptidyl-pyrromethane cofactor linkage (GO:0018160)
      tetrapyrrole biosynthetic process (GO:0033014)
GO(MF)
GO(CC)
KEGG
  •   2 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010008
(v2.0)
HmbsNM_001110251,NM_01355115288
24.26537.599157.1719829.265840.726877.151822.13117.3996143.729481.6353
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010126
(v1.0)
Hmbs15288
MGA0.98092
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010008
(v2.0)
Hmbs15288
650/481-0.0782461/481-0.1771515/4813.66651634/4813.088914/481-2.9576117/481-2.6233
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010008
(v2.0)
Hmbs15288
347/2220.131234/222-0.0401424/2224.46121217/2223.77098/222-2.593559/222-2.481
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010008
(v2.0)
Hmbs15288
76.866711268.63
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010008
(v2.0)
Hmbs15288
36.77156556.57
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010126
(v1.0)
HmbsNM_001110251,NM_01355115288
7.898684.9981621.796428.255215.9753
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010126
(v1.0)
HmbsNM_001110251,NM_01355115288
133.2992.5446218.662349.766186.194
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010126
(v1.0)
HmbsNM_001110251,NM_01355115288
8.258798.874015.4531
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010126
(v1.0)
HmbsNM_001110251,NM_01355115288
8.06144.947985.45432
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010126
(v1.0)
HmbsNM_001110251,NM_01355115288
58.673930.8975
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010126
(v1.0)
HmbsNM_001110251,NM_01355115288
8.263598.752475.98212
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010126
(v1.0)
HmbsNM_001110251,NM_01355115288
20.180127.281530.3337
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010126
(v1.0)
HmbsNM_001110251,NM_01355115288
325.451388.21
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010126
(v1.0)
HmbsNM_001110251,NM_01355115288
0.31677522.1036
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010126
(v1.0)
HmbsNM_001110251,NM_01355115288
4.155521.45613
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010126
(v1.0)
2755C0359E12-3Mm.1710Hmbs15288
U030768NAP096502-001TC897819,TC897818,TC897817P22907U,F,22.80963.03053.57753.83943.30413.50773.5092
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010126
(v1.0)
1436930_x_atMm.247676HmbsNM_013551.2,NM_001110251.115288
41.2750237.15289.525346.4
0010126
(v1.0)
1426475_atMm.247676HmbsNM_013551.2,NM_001110251.115288
0000375.1
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010126
(v1.0)
A_51_P155361HmbsNM_01355115288
1 (0.807 to 1.195)1P0.166 (0.144 to 0.19)1.26E-12P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0010126
(v1.0)
Hmbs15288
120230