DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010129
GeneHmg20b
SynonymsBRAF35
BRCA2-associated factor 35
Hmgx2
Hmgxb2
Smarce1r
Desc.high mobility group 20B
LocusNM_001163166 chr10:80808791-80813202(-)
NM_001163165 chr10:80808791-80813171(-)
NM_010440 chr10:80808791-80813172(-)
DB links


Entrez 15353
MGI 1341190
Ensembl ENSMUSG00000020232
Vega OTTMUSG00000017278
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010012
(v2.0)
Hmg20bNM_001163165,NM_001163166,NM_01044015353
27.427817.85717.086510.144913.901823.639613.579823.67516.676526.4506
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010129
(v1.0)
Hmg20b15353
Maternal RNA0.81578
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010012
(v2.0)
Hmg20b15353
869/5210.2249396/521-0.510882/5210.9178321/5210.630180/521-0.639595/521-0.4068
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010012
(v2.0)
Hmg20b15353
391/2230.2961177/223-0.447157/2231.5817186/2231.061110/223-2.3104130/223-1.3676
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010012
(v2.0)
Hmg20b15353
69.274721332.52
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010012
(v2.0)
Hmg20b15353
26.370710624.88
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010129
(v1.0)
Hmg20bNM_001163165,NM_001163166,NM_01044015353
18.561911.85517.544079.641249.68889
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010129
(v1.0)
Hmg20bNM_001163165,NM_001163166,NM_01044015353
77.601450.553933.670241.705838.6662
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010129
(v1.0)
Hmg20bNM_001163165,NM_001163166,NM_01044015353
19.408210.031312.9341
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010129
(v1.0)
Hmg20bNM_001163165,NM_001163166,NM_01044015353
18.944311.73617.4885
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010129
(v1.0)
Hmg20bNM_001163165,NM_001163166,NM_01044015353
68.6513157.492
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010129
(v1.0)
Hmg20bNM_001163165,NM_001163166,NM_01044015353
19.41959.8939219.1808
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010129
(v1.0)
Hmg20bNM_001163165,NM_001163166,NM_01044015353
6.984639.30911.5427
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010129
(v1.0)
Hmg20bNM_001163165,NM_001163166,NM_01044015353
61.247963.5314
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010129
(v1.0)
Hmg20bNM_001163165,NM_001163166,NM_01044015353
4.485911.25676
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010129
(v1.0)
Hmg20bNM_001163165,NM_001163166,NM_01044015353
22.949311.6509
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010129
(v1.0)
21858L0920C04-3Hmg20b15353
U032043NAP016726-001Hmg20b;TC925734,TC925730,TC925729,TC925728,TC925726Q9NSF73.69453.56173.34223.88233.82173.98913.8512
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010129
(v1.0)
1417637_a_atMm.38474Hmg20bNM_010440.3,NM_001163165.1,NM_001163166.115353
29.92537.136.87537.82539.925
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010129
(v1.0)
A_52_P358963Hmg20bNM_01044015353
11P0.4560.0804P
Proteome N/A