DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010134
GeneHmgb1
Synonymsamphoterin
DEF
HMG-1
Hmg1
p30
SBP-1
Desc.high mobility group box 1
LocusNM_010439 chr5:149858804-149864613(-)
DB links


Entrez 15289
MGI 96113
Ensembl ENSMUSG00000066551
Vega OTTMUSG00000016672
Featureprotein-coding
GO(BP)
  •   36 Terms
      negative regulation of transcription from RNA polymerase II promoter (GO:0000122)
      cell morphogenesis (GO:0000902)
      eye development (GO:0001654)
      positive regulation of protein phosphorylation (GO:0001934)
      positive regulation of mesenchymal cell proliferation (GO:0002053)
      base-excision repair, DNA ligation (GO:0006288)
      regulation of transcription from RNA polymerase II promoter (GO:0006357)
      chemotaxis (GO:0006935)
      nervous system development (GO:0007399)
      negative regulation of DNA replication (GO:0008156)
      positive regulation of cell proliferation (GO:0008284)
      positive regulation of cell death (GO:0010942)
      positive regulation of neuron projection development (GO:0010976)
      positive regulation of smooth muscle cell migration (GO:0014911)
      negative regulation of RNA polymerase II transcriptional preinitiation complex assembly (GO:0017055)
      lung development (GO:0030324)
      positive regulation of cell migration (GO:0030335)
      neuron projection development (GO:0031175)
      actin cytoskeleton reorganization (GO:0031532)
      DNA geometric change (GO:0032392)
      positive regulation of myeloid cell apoptotic process (GO:0033034)
      V(D)J recombination (GO:0033151)
      response to interferon-gamma (GO:0034341)
      positive regulation of apoptotic process (GO:0043065)
      positive regulation of cysteine-type endopeptidase activity involved in apoptotic process (GO:0043280)
      positive regulation of DNA binding (GO:0043388)
      positive regulation of myeloid cell differentiation (GO:0045639)
      positive regulation of myoblast differentiation (GO:0045663)
      positive regulation of glycogen catabolic process (GO:0045819)
      positive regulation of mitotic cell cycle (GO:0045931)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      regulation of inflammatory response (GO:0050727)
      male-specific defense response to bacterium (GO:0050831)
      induction of positive chemotaxis (GO:0050930)
      response to glucocorticoid stimulus (GO:0051384)
      myoblast proliferation (GO:0051450)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010017
(v2.0)
Hmgb1NM_01043915289
29.167629.045545.572392.629187.251345.834154.5829.6673184.816412.45
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010134
(v1.0)
Hmgb115289
MGA0.99357
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010017
(v2.0)
Hmgb115289
609/3160.4325373/3160.1227139/3162.3722353/3161.483768/316-0.1564521/3160.1216
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010017
(v2.0)
Hmgb115289
381/1231.112171/1230.3566135/1233.6103292/1232.554325/123-0.2323284/1230.6039
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010017
(v2.0)
Hmgb115289
39.112816423.85
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010017
(v2.0)
Hmgb115289
11.18061298.67
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010134
(v1.0)
Hmgb1NM_01043915289
30.179131.352168.9789129.589109.133
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010134
(v1.0)
Hmgb1NM_01043915289
0.4765330.2961520.637331.316050.490276
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010134
(v1.0)
Hmgb1NM_01043915289
31.555110.666934.2058
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010134
(v1.0)
Hmgb1NM_01043915289
30.800931.037321.9609
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010134
(v1.0)
Hmgb1NM_01043915289
0.3008990.211159
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010134
(v1.0)
Hmgb1NM_01043915289
31.573410.520824.086
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010134
(v1.0)
Hmgb1NM_01043915289
63.8637125.123127.38
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010134
(v1.0)
Hmgb1NM_01043915289
1.301851.47679
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010134
(v1.0)
Hmgb1NM_01043915289
22.091182.036
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010134
(v1.0)
Hmgb1NM_01043915289
1.292233.66716
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010134
(v1.0)
6528H3026F10-3Mm.16421Hmgb115289
NAP031368-13.40653.3093.24383.40473.36693.40713.3549
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010134
(v1.0)
1416176_atMm.313345Hmgb115289
440638.175730.9751196.425817.975
0010134
(v1.0)
1425048_a_atMm.455099~Mm.313345Gm12568~Hmgb1~100038833
15289
755.7351.5535.4251541.751016.175
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010134
(v1.0)
A_51_P269554Hmgb1NM_01043915289
11P1.2240.376P
0010134
(v1.0)
A_52_P117821Hmgb1NM_01043915289
11P0.5290.0996P
0010134
(v1.0)
A_52_P324336Hmgb1BC06479015289
11P0.8460.343P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0010134
(v1.0)
Hmgb115289
221322