DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010137
GeneHmgb3
SynonymsHmg2a
Hmg4
Desc.high mobility group box 3
LocusNM_008253 chrX:68809168-68813829(+)
DB links


Entrez 15354
MGI 1098219
Ensembl ENSMUSG00000015217
Vega OTTMUSG00000017794
Featureprotein-coding
GO(BP)
  •   2 Terms
      negative regulation of B cell differentiation (GO:0045578)
      negative regulation of myeloid cell differentiation (GO:0045638)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010020
(v2.0)
Hmgb3NM_001293623,NM_001293624,NM_001293625,NM_00825315354
35.940829.246182.0855378.49302.61961.04222.261752.2262351.5863.0848
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010137
(v1.0)
Hmgb315354
2-Cell Transient0.98736
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010020
(v2.0)
Hmgb315354
401/2000.4887201/200-0.1084154/2003.1484459/2002.514971/2000.5541412/2000.4414
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010020
(v2.0)
Hmgb315354
255/811.132118/810.4221149/814.2886438/813.725441/811.0379187/810.6016
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010020
(v2.0)
Hmgb315354
58.087911052.81
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010020
(v2.0)
Hmgb315354
20.36376630.85
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010137
(v1.0)
Hmgb3NM_00825315354
28.798753.7701266.692198.86815.0781
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010137
(v1.0)
Hmgb3NM_00825315354
0.6329311.4207110.40156.503220.634829
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010137
(v1.0)
Hmgb3NM_00825315354
30.111712.698858.6644
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010137
(v1.0)
Hmgb3NM_00825315354
29.39253.230236.6734
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010137
(v1.0)
Hmgb3NM_00825315354
1.442730.86423
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010137
(v1.0)
Hmgb3NM_00825315354
30.129212.524840.2221
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010137
(v1.0)
Hmgb3NM_00825315354
246.916192.015229.859
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010137
(v1.0)
Hmgb3NM_00825315354
6.433446.62384
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010137
(v1.0)
Hmgb3NM_00825315354
75.3734177.968
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010137
(v1.0)
Hmgb3NM_00825315354
1.152452.97316
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010137
(v1.0)
4976G0117C11-3Mm.340Hmgb315354
U019917NAP094469-001Hmgb3;TC891664,TC891659O54879U,F,23.31793.29273.44953.81892.92083.0932.7842
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010137
(v1.0)
1416155_atMm.336087Hmgb3NM_008253.315354
395.55948.8253089.7751582.725673.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010137
(v1.0)
A_51_P138548Hmgb3NM_00825315354
11P0.7560.218P
Proteome N/A