DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0010144

Gene

Hmgn1

Synonyms

HMG-14
Hmg14

Description

high mobility group nucleosomal binding domain 1

Locus

NM_008251 UCSC: chr16:96343195-96349332(-) OLP: chr16:96343195-96349332(-)

DB links

Entrez 15312
MGI 96120
Ensembl ENSMUSG00000040681
Vega OTTMUSG00000019978

Feature

protein-coding

GO_BP

8 Terms

GO_MF

3 Terms

GO_CC

3 Terms

KEGG

see DBTMEE:2010027 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0010144 (v1.0)	Hmgn1	NM_008251	15312	307.02	304.323	112.614	142.602	151.369

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0010144 (v1.0)	Hmgn1	NM_008251	15312	321.018	51.783	332.023

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0010144 (v1.0)	Hmgn1	NM_008251	15312	313.345	301.268	343.498

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0010144 (v1.0)	Hmgn1	NM_008251	15312	321.205	51.0738	376.737

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0010144 (v1.0)	Hmgn1	NM_008251	15312	104.263	137.688	159.812

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0010144 (v1.0)	Hmgn1	NM_008251	15312	690.869	202.623

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0010144 (v1.0)	Hmgn1	NM_008251	15312	53.945	31.6248

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0010144 (v1.0)	18027	L0045B11-3	Mm.2756	Hmgn1	15312	U037343	NAP096811-001	Hmgn1;	TC918810,TC918805	P18608	U,F,2	3.27	3.22	3.2426	3.3706	3.658	3.4472	3.5899

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0010144 (v1.0)	1422495_a_at	Mm.2756	Hmgn1	NM_008251.3	15312	3793.3	3790.95	2572.32	2569.98	3832.6
0010144 (v1.0)	1455897_x_at	Mm.2756	Hmgn1	NM_008251.3	15312	4390.67	4013.95	3062.62	4677.4	4813.62
0010144 (v1.0)	1438940_x_at	Mm.2756	Hmgn1	NM_008251.3	15312	3272.55	3402.32	2868.15	3896.73	3312.1

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0010144 (v1.0)	A_51_P468173	Hmgn1	NM_008251	15312	1	1	P	0.511	0.094	P

N/A