DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010144
GeneHmgn1
SynonymsHMG-14
Hmg14
Desc.high mobility group nucleosomal binding domain 1
LocusNM_008251 chr16:96343195-96349332(-)
DB links


Entrez 15312
MGI 96120
Ensembl ENSMUSG00000040681
Vega OTTMUSG00000019978
Featureprotein-coding
GO(BP)
  •   8 Terms
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010027
(v2.0)
Hmgn1NM_00825115312
141.596295.46440.147151.385205.705493.218213.208464230.052623.648
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010144
(v1.0)
Hmgn115312
Minor ZGA0.97067
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010027
(v2.0)
Hmgn115312
705/4930.0032451/493-0.2441202/4932.2859664/4931.755774/493-0.671534/493-0.4829
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010027
(v2.0)
Hmgn115312
341/2010.2486180/201-0.2739185/2013.4046585/2012.85720/201-1.230595/201-1.6649
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010027
(v2.0)
Hmgn115312
66.916112951.87
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010027
(v2.0)
Hmgn115312
17.15877722.28
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010144
(v1.0)
Hmgn1NM_00825115312
307.02304.323112.614142.602151.369
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010144
(v1.0)
Hmgn1FR222923,NM_00825115312
106.96695.193341.397258.358854.1014
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010144
(v1.0)
Hmgn1NM_00825115312
321.01851.783332.023
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010144
(v1.0)
Hmgn1NM_00825115312
313.345301.268343.498
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010144
(v1.0)
Hmgn1FR222923,NM_00825115312
96.6728103.484
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010144
(v1.0)
Hmgn1NM_00825115312
321.20551.0738376.737
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010144
(v1.0)
Hmgn1NM_00825115312
104.263137.688159.812
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010144
(v1.0)
Hmgn1FR222923,NM_00825115312
57.730861.2632
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010144
(v1.0)
Hmgn1NM_00825115312
690.869202.623
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010144
(v1.0)
Hmgn1NM_00825115312
53.94531.6248
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010144
(v1.0)
18027L0045B11-3Mm.2756Hmgn115312
U037343NAP096811-001Hmgn1;TC918810,TC918805P18608U,F,23.273.223.24263.37063.6583.44723.5899
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010144
(v1.0)
1422495_a_atMm.2756Hmgn1NM_008251.315312
3793.33790.952572.3252569.9753832.6
0010144
(v1.0)
1455897_x_atMm.2756Hmgn1NM_008251.315312
4390.6754013.953062.6254677.44813.625
0010144
(v1.0)
1438940_x_atMm.2756Hmgn1NM_008251.315312
3272.553402.3252868.153896.7253312.1
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010144
(v1.0)
A_51_P468173Hmgn1NM_00825115312
11P0.5110.094P
Proteome N/A