DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010149
GeneHmgxb4
SynonymsHmgb2l1
Desc.HMG box domain containing 4
LocusNM_178017 chr8:77517602-77555871(+)
DB links


Entrez 70823
MGI 1918073
Ensembl ENSMUSG00000034518
Vega OTTMUSG00000017305
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010032
(v2.0)
Hmgxb4NM_17801770823
4.437271.6173115.79550.504262.063827.890112.2343103.23450.880329.4465
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010149
(v1.0)
Hmgxb470823
Minor ZGA0.95751
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010032
(v2.0)
Hmgxb470823
671/4290.1322476/4290.033773/4291.0254193/4290.1779134/4290.3758659/4290.0199
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010032
(v2.0)
Hmgxb470823
372/1820.5162227/1820.201566/1822.0662172/1821.238335/182-0.3127201/182-0.4532
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010032
(v2.0)
Hmgxb470823
44.346714131.45
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010032
(v2.0)
Hmgxb470823
10.46669810.68
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010149
(v1.0)
Hmgxb4NM_17801770823
74.444680.13737.62743.02928.64566
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010149
(v1.0)
Hmgxb4NM_17801770823
210.186199.794104.096118.90526.6754
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010149
(v1.0)
Hmgxb4NM_17801770823
77.83861.6227387.4312
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010149
(v1.0)
Hmgxb4NM_17801770823
75.978279.332476.378
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010149
(v1.0)
Hmgxb4NM_17801770823
175.888158.273
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010149
(v1.0)
Hmgxb4NM_17801770823
77.88391.600583.7688
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010149
(v1.0)
Hmgxb4NM_17801770823
34.836841.546535.2713
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010149
(v1.0)
Hmgxb4NM_17801770823
177.689189.42
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010149
(v1.0)
Hmgxb4NM_17801770823
39.232821.5395
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010149
(v1.0)
Hmgxb4NM_17801770823
53.908859.3248
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010149
(v1.0)
3302C0632H08-3Mm.25150Hmgb2l170823
U009505NAP092765-001TC864718,TC821569,TC821568Q9D639U,F,22.70442.55072.45052.54792.43742.49742.4848
0010149
(v1.0)
9631H3084C07-3Mm.25150Hmgb2l170823
U009505NAP117168-1TC864719,TC864718,TC821569,TC821568Q9D639U,F,23.98894.04133.39373.3843.15253.22433.2665
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010149
(v1.0)
1426953_atMm.261739Hmgxb4NM_178017.170823
704.251280.25572.95662.25523.925
0010149
(v1.0)
1453290_atMm.261739Hmgxb4NM_178017.170823
1242.8752387.2888.2622.45727.05
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010149
(v1.0)
A_51_P323174Hmgb2l1NM_17801770823
11P1.1490.398P
0010149
(v1.0)
A_52_P546110Hmgb2l1NM_17801770823
11P0.9460.695P
Proteome N/A