DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010251
GeneHps6
SynonymsBLOC-2
ru
ruby eye
Desc.Hermansky-Pudlak syndrome 6
LocusNM_176785 chr19:46077968-46080663(+)
DB links


Entrez 20170
MGI 2181763
Ensembl ENSMUSG00000074811
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010138
(v2.0)
Hps6NM_17678520170
4.2800924.79255.3921110.96735.677423.216987.745697.9188.340372.26812
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010251
(v1.0)
Hps620170
Maternal RNA0.9212
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010138
(v2.0)
Hps620170
800/4490.3198399/449-0.285892/4491.2912351/4490.9721157/4490.5377834/4490.2934
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010138
(v2.0)
Hps620170
416/1960.5705178/196-0.253860/1961.8304259/1961.7205121/1961.3435590/1960.9869
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010138
(v2.0)
Hps620170
86.457917848.57
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010138
(v2.0)
Hps620170
42.405810341.17
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010251
(v1.0)
Hps6NM_17678520170
25.77953.752448.166873.938375.4713
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010251
(v1.0)
Hps6NM_17678520170
30.87024.059119.125564.508886.28571
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010251
(v1.0)
Hps6NM_17678520170
26.95491.565274.094
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010251
(v1.0)
Hps6NM_17678520170
26.31063.714765.87552
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010251
(v1.0)
Hps6NM_17678520170
4.121066.58699
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010251
(v1.0)
Hps6NM_17678520170
26.97051.543836.44408
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010251
(v1.0)
Hps6NM_17678520170
7.561253.802655.79066
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010251
(v1.0)
Hps6NM_17678520170
4.460146.78241
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010251
(v1.0)
Hps6NM_17678520170
3.355912.73291
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010251
(v1.0)
Hps6NM_17678520170
00.0433291
NIA60mer N/A
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010251
(v1.0)
A_51_P113274Hps6NM_17678520170
11P0.5870.122P
Proteome N/A