DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010872
GeneJhdm1d
SynonymsENSMUSG00000073143
Kdm7a
Desc.jumonji C domain-containing histone demethylase 1 homolog D (S. cerevisiae)
LocusNM_001033430 chr6:39086619-39156772(-)
DB links


Entrez 338523
MGI 2443388
Ensembl ENSMUSG00000042599
Vega OTTMUSG00000022808
Featureprotein-coding
GO(BP)
GO(MF)
  •   11 Terms
      iron ion binding (GO:0005506)
      zinc ion binding (GO:0008270)
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
      histone demethylase activity (H3-K9 specific) (GO:0032454)
      methylated histone residue binding (GO:0035064)
      histone demethylase activity (H4-K20 specific) (GO:0035575)
      metal ion binding (GO:0046872)
      histone demethylase activity (H3-K36 specific) (GO:0051864)
      histone demethylase activity (H3-K27 specific) (GO:0071558)
GO(CC)
Ver2_FPKM N/A
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010872
(v1.0)
Jhdm1d338523
Minor ZGA0.97687
SPR_Histone_Erkek_+-5KfromTSS N/A
SPR_Histone_Erkek_+-2KfromTSS N/A
SPR_Methy_Kobayashi_+-5KfromTSS N/A
SPR_Methy_Kobayashi_+-2KfromTSS N/A
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010872
(v1.0)
Jhdm1dNM_001033430338523
47.757453.621851.844528.53441.49992
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010872
(v1.0)
Jhdm1dNM_001033430338523
2645.252324.552054.67580.41423.2573
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010872
(v1.0)
Jhdm1dNM_001033430338523
49.93481.2014958.5025
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010872
(v1.0)
Jhdm1dNM_001033430338523
48.741353.083438.009
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010872
(v1.0)
Jhdm1dNM_001033430338523
715.761530.205
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010872
(v1.0)
Jhdm1dNM_001033430338523
49.96381.1850441.687
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010872
(v1.0)
Jhdm1dNM_001033430338523
47.999927.551125.0683
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010872
(v1.0)
Jhdm1dNM_001033430338523
140.825139.095
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010872
(v1.0)
Jhdm1dNM_001033430338523
25.543124.8686
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010872
(v1.0)
Jhdm1dNM_001033430338523
7.8940912.8954
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010872
(v1.0)
1427359_atMm.293175Jhdm1dNM_001033430.4338523
195.4612.875549.82573.2750
0010872
(v1.0)
1456150_atMm.293175Jhdm1dNM_001033430.4338523
270.45536.4439.475210.50
0010872
(v1.0)
1435867_atMm.293175Jhdm1dNM_001033430.4338523
00275.675539.750
Agilent44K N/A
Proteome N/A