DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0010877
GeneJmjd6
SynonymsPSR
PtdSerR
Ptdsr
Desc.jumonji domain containing 6
LocusNM_033398 chr11:116698746-116704763(-)
DB links


Entrez 107817
MGI 1858910
Ensembl ENSMUSG00000056962
Vega OTTMUSG00000003777
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010777
(v2.0)
Jmjd6NM_033398107817
21.507528.578129.575641.89428.128531.18878.6503934.546128.089734.6129
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0010877
(v1.0)
Jmjd6107817
2-Cell Transient0.97837
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010777
(v2.0)
Jmjd6107817
1007/4920.5196632/4920.24461233/4924.89253604/4924.197212/492-3.1964127/492-2.539
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010777
(v2.0)
Jmjd6107817
498/1671.059306/1670.754911/1675.94912232/1675.050810/167-1.90269/167-1.8518
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010777
(v2.0)
Jmjd6107817
84.950721040.45
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010777
(v2.0)
Jmjd6107817
14.523513710.6
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010877
(v1.0)
Jmjd6NM_033398107817
29.713920.606931.253319.53176.17572
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0010877
(v1.0)
Jmjd6NM_033398107817
54.022732.112163.181641.461414.3737
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0010877
(v1.0)
Jmjd6NM_033398107817
31.06867.8655122.4826
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0010877
(v1.0)
Jmjd6NM_033398107817
30.32620.425.65
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0010877
(v1.0)
Jmjd6NM_033398107817
35.540860.9158
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0010877
(v1.0)
Jmjd6NM_033398107817
31.08677.7577828.132
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0010877
(v1.0)
Jmjd6NM_033398107817
28.935618.858719.4573
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0010877
(v1.0)
Jmjd6NM_033398107817
71.82282.4869
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0010877
(v1.0)
Jmjd6NM_033398107817
20.901920.4676
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0010877
(v1.0)
Jmjd6NM_033398107817
57.222125.4336
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0010877
(v1.0)
12861H3153F08-3Mm.24997Ptdsr107817
U033663NAP050074-1Ptdsr;TC904677Q9ERI5U,F,23.02952.8923.13843.00153.20343.13193.1266
0010877
(v1.0)
19157L0251B07-3Mm.24997Ptdsr107817
U033663NAP016292-001Ptdsr;TC904682,TC904673Q9ERI5U,F,23.11213.21982.95883.15512.55862.80112.5112
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0010877
(v1.0)
1454109_a_atMm.383423Jmjd6NM_033398.2107817
223.5252.925250.325231.625114.65
0010877
(v1.0)
1420056_s_atMm.383423Jmjd6NM_033398.2107817
428.825557.05465.775583.7304.125
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0010877
(v1.0)
A_51_P332952PtdsrNM_033398107817
11P0.5580.116P
Proteome N/A