DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011053
GeneKdm1b
SynonymsAof1
Desc.lysine (K)-specific demethylase 1B
LocusNM_172262 chr13:47138868-47180648(+)
DB links


Entrez 218214
MGI 2145261
Ensembl ENSMUSG00000038080
Vega OTTMUSG00000024759
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010960
(v2.0)
Kdm1bNM_172262218214
3.1895362.999175.547424.72019.4923715.20167.0420755.878611.203518.8051
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011053
(v1.0)
Kdm1b218214
Maternal RNA0.94233
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010960
(v2.0)
Kdm1b218214
761/4510.2415444/451-0.1384114/4511.5913307/4510.7731181/4510.7353898/4510.3935
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010960
(v2.0)
Kdm1b218214
398/1890.5591203/189-0.013108/1892.7172296/1891.964376/1890.7309486/1890.7601
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010960
(v2.0)
Kdm1b218214
69.122512256.66
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010960
(v2.0)
Kdm1b218214
19.93565933.79
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011053
(v1.0)
Kdm1bNM_172262218214
76.642661.166521.51347.694055.79436
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011053
(v1.0)
Kdm1bNM_172262218214
692.305550.639109.4559.299833.7663
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011053
(v1.0)
Kdm1bNM_172262218214
80.13680.9837966.734
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011053
(v1.0)
Kdm1bNM_172262218214
78.221560.552448.5227
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011053
(v1.0)
Kdm1bNM_172262218214
558.404502.793
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011053
(v1.0)
Kdm1bNM_172262218214
80.18340.97031553.218
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011053
(v1.0)
Kdm1bNM_172262218214
19.91817.428919.04736
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011053
(v1.0)
Kdm1bNM_172262218214
45.832721.8595
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011053
(v1.0)
Kdm1bNM_172262218214
27.36115.43058
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011053
(v1.0)
Kdm1bNM_172262218214
14.555430.9016
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011053
(v1.0)
18381L0204G12-3Mm.31259MGC38211218214
U014800NAP116007-1TC894503,TC894502,TC816190,TC794617U,F,24.20794.5294.96944.64514.13084.54384.2276
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011053
(v1.0)
1433649_atMm.31259Kdm1bNM_172262.2218214
2524.152931.825939.6153.725129.275
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011053
(v1.0)
A_51_P111245Aof1NM_172262218214
11P0.650.145P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011053
(v1.0)
Aof1218214
120.67130.67