DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011055
GeneKdm2b
SynonymsCxxc2
Fbxl10
Jhdm1b
Desc.lysine (K)-specific demethylase 2B
LocusNM_013910 chr5:123320685-123350359(-)
NM_001005866 chr5:123320685-123438542(-)
NM_001003953 chr5:123320685-123439101(-)
DB links


Entrez 30841
MGI 1354737
Ensembl ENSMUSG00000029475
Vega OTTMUSG00000026750
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010962
(v2.0)
Kdm2bNM_001003953,NM_001005866,NM_01391030841
7.43135162.139181.28339.276760.293515.32346.91891140.52532.735522.5033
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011055
(v1.0)
Kdm2b30841
Maternal RNA0.98455
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010962
(v2.0)
Kdm2b30841
895/4990.3294618/4990.1921324/4994.97533194/4994.0027404/4991.74471657/4991.1305
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010962
(v2.0)
Kdm2b30841
475/2060.6898327/2060.54821083/2065.91412313/2064.8034242/2062.2672955/2061.6088
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010962
(v2.0)
Kdm2b30841
73.710813654.2
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010962
(v2.0)
Kdm2b30841
12.24987117.25
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011055
(v1.0)
Kdm2bNM_001003953,NM_001005866,NM_01391030841
168.57125.84729.275641.77064.79395
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011055
(v1.0)
Kdm2bNM_001003953,NM_001005866,NM_01391030841
2245.342219.22354.7171733.91251.816
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011055
(v1.0)
Kdm2bNM_001003953,NM_001005866,NM_01391030841
176.2562.71772137.302
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011055
(v1.0)
Kdm2bNM_001003953,NM_001005866,NM_01391030841
172.043124.584104.219
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011055
(v1.0)
Kdm2bNM_001003953,NM_001005866,NM_01391030841
1045.695328.85
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011055
(v1.0)
Kdm2bNM_001003953,NM_001005866,NM_01391030841
176.3582.6805114.304
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011055
(v1.0)
Kdm2bNM_001003953,NM_001005866,NM_01391030841
27.104640.331222.7636
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011055
(v1.0)
Kdm2bNM_001003953,NM_001005866,NM_01391030841
240.388100.352
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011055
(v1.0)
Kdm2bNM_001003953,NM_001005866,NM_01391030841
76.168836.0303
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011055
(v1.0)
Kdm2bNM_001003953,NM_001005866,NM_01391030841
12.84858.48567
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011055
(v1.0)
10688H3102B12-3Mm.86406Fbxl1030841
TC869589U,F3.17013.27173.03533.28982.75322.95532.6751
0011055
(v1.0)
21775L0910D07-3Mm.86406Fbxl1030841
U042688NAP034497-1TC8695913.43543.20183.4873.35513.9393.66493.8292
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011055
(v1.0)
1452198_atMm.86406Kdm2bNM_001003953.1,NM_001005866.1,NM_013910.230841
1109.6251900601.15880.775319.5
0011055
(v1.0)
1459861_s_atMm.86406Kdm2bNM_001003953.1,NM_001005866.1,NM_013910.230841
8993.3511521.9254525.8759380.753928.375
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011055
(v1.0)
A_51_P139597Fbxl10NM_00100395330841
11P0.4070.094P
0011055
(v1.0)
A_51_P404953Fbxl10NM_00100395330841
11P0.3510.117P
0011055
(v1.0)
A_52_P24648Fbxl10NM_00100395330841
11P0.5240.102P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011055
(v1.0)
Fbxl1030841
1010.6791112.6710