DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011057
GeneKdm3b
SynonymsJHDM2B
Jmjd1b
Desc.KDM3B lysine (K)-specific demethylase 3B
LocusNM_001081256 chr18:34936662-34999024(+)
DB links


Entrez 277250
MGI 1923356
Ensembl ENSMUSG00000038773
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010964
(v2.0)
Kdm3bNM_001081256277250
10.63874.009424.6868615.972330.860817.31510.51484.8964927.750912.4953
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011057
(v1.0)
Kdm3b277250
MGA0.9965
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010964
(v2.0)
Kdm3b277250
745/4710.1484426/471-0.2605245/4712.6273883/4712.231912/471-3.134185/471-3.0471
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010964
(v2.0)
Kdm3b277250
381/1840.5348218/1840.1278213/1843.7268725/1843.2923/184-3.498137/184-2.8634
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010964
(v2.0)
Kdm3b277250
50.967612640.45
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010964
(v2.0)
Kdm3b277250
9.51467313.03
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011057
(v1.0)
Kdm3bNM_001081256277250
4.169583.2467911.873421.37017.30702
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011057
(v1.0)
Kdm3bFR072242,FR149057,NM_001081256277250
14.833414.594151.702275.735523.8146
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011057
(v1.0)
Kdm3bNM_001081256277250
4.359683.89073.54232
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011057
(v1.0)
Kdm3bNM_001081256277250
4.255483.214193.62974
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011057
(v1.0)
Kdm3bFR072242,FR149057,NM_001081256277250
37.950835.9113
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011057
(v1.0)
Kdm3bNM_001081256277250
4.362213.837413.98098
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011057
(v1.0)
Kdm3bNM_001081256277250
10.992920.633619.178
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011057
(v1.0)
Kdm3bFR072242,FR149057,NM_001081256277250
74.919958.4947
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011057
(v1.0)
Kdm3bNM_001081256277250
2.332746.79777
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011057
(v1.0)
Kdm3bNM_001081256277250
1.091021.38388
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011057
(v1.0)
1428320_atMm.479894Kdm3bNM_001081256.1277250
135.1129.425139.2222.35216.95
0011057
(v1.0)
1458417_atMm.479894Kdm3bNM_001081256.1277250
00383.025725.025516.4
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011057
(v1.0)
A_51_P383584Jmjd1bXM_619530277250
11P1.1180.585P
Proteome N/A