DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011058
GeneKdm4a
SynonymsD4Ertd222e
JHDM3A
Jmjd2
Jmjd2a
Desc.lysine (K)-specific demethylase 4A
LocusNM_001161823 chr4:117809609-117852648(-)
NM_172382 chr4:117814648-117852648(-)
DB links


Entrez 230674
MGI 2446210
Ensembl ENSMUSG00000033326
Vega OTTMUSG00000008717
Featureprotein-coding
GO(BP)
GO(MF)
  •   7 Terms
      zinc ion binding (GO:0008270)
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702)
      ubiquitin protein ligase binding (GO:0031625)
      methylated histone residue binding (GO:0035064)
      metal ion binding (GO:0046872)
      histone demethylase activity (H3-K36 specific) (GO:0051864)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010965
(v2.0)
Kdm4aNM_001161823,NM_172382230674
13.423863.245111.06731.258917.57813.949418.636988.621813.13289.76369
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011058
(v1.0)
Kdm4a230674
Minor ZGA0.99835
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010965
(v2.0)
Kdm4a230674
463/3030.0986300/303-0.1301107/3032.0561275/3031.184719/303-1.8831117/303-1.9584
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010965
(v2.0)
Kdm4a230674
255/1520.2322159/152-0.050998/1522.8717249/1522.025515/152-1.229169/152-1.7169
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010965
(v2.0)
Kdm4a230674
91.716815858.05
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010965
(v2.0)
Kdm4a230674
10.30917413.93
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011058
(v1.0)
Kdm4aNM_001161823,NM_172382230674
65.448976.932823.210212.028712.9777
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011058
(v1.0)
Kdm4aNM_001161823,NM_172382230674
647.295698.122222.799107.45110.901
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011058
(v1.0)
Kdm4aNM_001161823,NM_172382230674
68.43294.9092283.9353
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011058
(v1.0)
Kdm4aNM_001161823,NM_172382230674
66.797376.160365.7243
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011058
(v1.0)
Kdm4aNM_001161823,NM_172382230674
676.775528.743
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011058
(v1.0)
Kdm4aNM_001161823,NM_172382230674
68.47264.8419872.0842
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011058
(v1.0)
Kdm4aNM_001161823,NM_172382230674
21.48911.61429.26416
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011058
(v1.0)
Kdm4aNM_001161823,NM_172382230674
119.40899.0008
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011058
(v1.0)
Kdm4aNM_001161823,NM_172382230674
37.95463.9177
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011058
(v1.0)
Kdm4aNM_001161823,NM_172382230674
0.7828383.21915
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011058
(v1.0)
1435340_atMm.234234Kdm4aNM_001161823.1,NM_172382.2230674
695.875909.075477.80379.225
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011058
(v1.0)
A_52_P281209Jmjd2aAK129187230674
11P0.5960.121P
Proteome N/A