DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011064
GeneKdm5c
SynonymsJarid1c
Smcx
Desc.lysine (K)-specific demethylase 5C
LocusNM_013668 chrX:148667773-148708897(+)
DB links


Entrez 20591
MGI 99781
Ensembl ENSMUSG00000025332
Vega OTTMUSG00000017219
Featureprotein-coding
GO(BP)
  •   6 Terms
GO(MF)
  •   9 Terms
      RNA polymerase II transcription factor binding (GO:0001085)
      DNA binding (GO:0003677)
      zinc ion binding (GO:0008270)
      oxidoreductase activity (GO:0016491)
      oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen (GO:0016702)
      oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
      histone demethylase activity (H3-K4 specific) (GO:0032453)
      identical protein binding (GO:0042802)
      metal ion binding (GO:0046872)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010971
(v2.0)
Kdm5cNM_01366820591
5.553138.0596612.973813.08116.96598.9760721.874914.287716.96397.91417
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011064
(v1.0)
Kdm5c20591
MGA0.97958
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010971
(v2.0)
Kdm5c20591
341/1890.337258/1890.3312228/1893.7883653/1893.103131/189-0.5359139/189-1.0346
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010971
(v2.0)
Kdm5c20591
182/800.6664131/800.5893218/804.8502608/804.2159/80-1.015429/80-2.0078
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010971
(v2.0)
Kdm5c20591
41.276810340.07
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010971
(v2.0)
Kdm5c20591
5.4237658.34
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011064
(v1.0)
Kdm5cNM_01366820591
14.918915.960317.218320.67626.1071
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011064
(v1.0)
Kdm5cFR345200,NM_01366820591
117.495140.56164.842221.063198.703
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011064
(v1.0)
Kdm5cNM_01366820591
15.5993.4043117.413
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011064
(v1.0)
Kdm5cNM_01366820591
15.226215.818.8543
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011064
(v1.0)
Kdm5cFR345200,NM_01366820591
293.728234.562
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011064
(v1.0)
Kdm5cNM_01366820591
15.60813.3576820.6788
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011064
(v1.0)
Kdm5cNM_01366820591
15.941519.963520.8265
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011064
(v1.0)
Kdm5cFR345200,NM_01366820591
237.722241.056
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011064
(v1.0)
Kdm5cNM_01366820591
7.406051.41565
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011064
(v1.0)
Kdm5cNM_01366820591
1.553792.52094
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011064
(v1.0)
18558L0214E04-3Mm.142655Smcx20591
U043801NAP094014-001Smcx;TC915202,TC801447P41230U,F,23.80153.62353.63333.67414.20353.93054.1396
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011064
(v1.0)
1444157_a_atMm.142655Kdm5cNM_013668.320591
0397.925000
0011064
(v1.0)
1457930_atMm.142655Kdm5cNM_013668.320591
000143.925109.425
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011064
(v1.0)
A_51_P477902Jarid1cNM_01366820591
11P1.2070.31P
0011064
(v1.0)
A_52_P124247Jarid1cAK08188720591
11P0.06230.0229P
Proteome N/A