DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011074
GeneKhdc1a
SynonymsNdg1
Desc.KH domain containing 1A
LocusNM_183322 chr1:21339758-21342280(+)
DB links


Entrez 368204
MGI 2676610
Ensembl ENSMUSG00000067750
Vega OTTMUSG00000033754
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2010983
(v2.0)
Khdc1aNM_183322368204
19.4635122.88278.077132.314134.5180.1343260.020796164.801106.7880.100378
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011074
(v1.0)
Khdc1a368204
Minor ZGA0.95941
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010983
(v2.0)
Khdc1a368204
240/1390.2733184/1390.28661/139-2.638612/139-2.113115/139-1.1037212/1390.0096
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2010983
(v2.0)
Khdc1a368204
56/260.575938/260.41740/26-1.6522/26-1.91754/26-0.53563/260.6573
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010983
(v2.0)
Khdc1a368204
34.33513890.36
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2010983
(v2.0)
Khdc1a368204
8.1905991.01
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011074
(v1.0)
Khdc1aNM_183322368204
127.684191.95598.453193.10480.0159368
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011074
(v1.0)
Khdc1aNM_183322368204
41.364146.464223.621428.7640
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011074
(v1.0)
Khdc1aNM_183322368204
133.5057.11801209.427
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011074
(v1.0)
Khdc1aNM_183322368204
130.315190.028121.836
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011074
(v1.0)
Khdc1aNM_183322368204
47.18938.7471
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011074
(v1.0)
Khdc1aNM_183322368204
133.5837.02052133.626
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011074
(v1.0)
Khdc1aNM_183322368204
91.152289.896473.6964
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011074
(v1.0)
Khdc1aNM_183322368204
28.452922.9575
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011074
(v1.0)
Khdc1aNM_183322368204
70.927107.054
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011074
(v1.0)
Khdc1aNM_183322368204
31.573172.7678
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011074
(v1.0)
1455423_atMm.482660Khdc1aNM_183322.2368204
202.55631367.375271.386.275
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011074
(v1.0)
A_52_P208521MGI:2676610NM_183322368204
11P1.1450.403P
0011074
(v1.0)
A_52_P70949MGI:2676610NM_183322368204
11P0.5230.0975P
Proteome
DBTMEEGeneEntrezGV_seqCountMII_seqCountZygote_seqCountGV_specCountMII_specCountZygote_specCount
0011074
(v1.0)
Khdc1a368204
032053