DBTMEE

DBTMEE
Database of Transcriptome in Mouse Early Embryos

DBTMEE:0011405

Gene

Ktn1

Synonyms

Description

kinectin 1

Locus

NM_008477 UCSC: chr14:48283431-48356239(+) OLP: chr14:48283431-48356239(+)

DB links

Entrez 16709
MGI 109153
Ensembl ENSMUSG00000021843

Feature

protein-coding

GO_BP

1 Terms

GO_MF

1 Terms

GO_CC

3 Terms

KEGG

see DBTMEE:2011323 (v2.0)

SPR_Histone_Erkek_5KaroundTSS

N/A

SPR_Histone_Erkek_2KaroundTSS

N/A

SPR_Methy_Kobayashi_5KaroundTSS

N/A

SPR_Methy_Kobayashi_2KaroundTSS

N/A

SOLiD_OocyteTo4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	SPR_FPKM	Oo_FPKM	1C_FPKM	2C_FPKM	4C_FPKM	MEF_FPKM
0011405 (v1.0)	Ktn1	NM_008477	16709	88.6884	43.4779	31.6577	14.1363	19.227

SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	1C_FPKM
0011405 (v1.0)	Ktn1	NM_008477	16709	92.7318	3.3559	47.4354

SOLiD_Partheno1C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	1C_FPKM	p1C_FPKM
0011405 (v1.0)	Ktn1	NM_008477	16709	90.5154	43.0414	30.6923

SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	SPR_FPKM	p1C_FPKM
0011405 (v1.0)	Ktn1	NM_008477	16709	92.7857	3.30993	33.6622

SOLiD_Partheno4C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	2C_FPKM	4C_FPKM	p4C_FPKM
0011405 (v1.0)	Ktn1	NM_008477	16709	29.3101	13.6491	16.993

Illumina_Oo_2C_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_FPKM	2C_FPKM
0011405 (v1.0)	Ktn1	NM_008477	16709	77.8302	54.2887

SOLiD_SC_Oo_REPLICA_FPKM_gene_guided

DBTMEE	Gene	RefSeq	Entrez	Oo_1_1	Oo_2_1
0011405 (v1.0)	Ktn1	NM_008477	16709	23.8857	31.8642

DBTMEE	Array_Feature_Number	Oligo_Parent_Clone	Unigene	Gene	Entrez	U_Cluster	NAP_Cluster	Gene_U/NAP	TIGR	SwissProt	EST	Oo	1C	2C	4C	8C	Morula	Blastocyst
0011405 (v1.0)	5759	H3007H12-3	Mm.182545			U015548	NAP039710-1	Ktn1;	TC824006	Q61595	U,F,2	1.9751	2.3845	2.2879	2.3012	2.1642	2.2175	2.2111
0011405 (v1.0)	10311	H3094A11-3	Mm.3110	Ktn1	16709	U015548	NAP104076-1	Ktn1;	TC898615	Q61595	U,F,2	3.6723	3.7489	3.0135	3.1144	2.814	2.9231	3.0327

DBTMEE	Probe_ID	Unigene	Gene	RefSeq	Entrez	Oo	1C	2C	8C	Blastocyst
0011405 (v1.0)	1455434_a_at	Mm.3110	Ktn1	NM_008477.2	16709	871.55	924.075	470.275	205.25	460.075

DBTMEE	Probe_ID	Gene	Acc	Entrez	Oo1_xFold	Oo1_pVal	Oo1_Flag	Oo2_xFold	Oo2_pVal	Oo2_Flag
0011405 (v1.0)	A_51_P233059	Ktn1	NM_008477	16709	1	1	P	1.597	0.134	P
0011405 (v1.0)	A_52_P307267	Ktn1	NM_008477	16709	1	1	P	0.62	0.14	P

DBTMEE	Gene	Entrez	GV_seqCount	MII_seqCount	Zygote_seqCount	GV_specCount	MII_specCount	Zygote_specCount
0011405 (v1.0)	Ktn1	16709	8	8.12	2	13.12	13.44	2