DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011541
GeneLdb1
SynonymsCLIM2
Desc.LIM domain binding 1
LocusNM_010697 chr19:46107091-46114111(-)
NM_001113408 chr19:46107091-46119701(-)
DB links


Entrez 16825
MGI 894762
Ensembl ENSMUSG00000025223
Vega OTTMUSG00000033442
Featureprotein-coding
GO(BP)
  •   21 Terms
      transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery (GO:0000972)
      gastrulation with mouth forming second (GO:0001702)
      hair follicle development (GO:0001942)
      transcription from RNA polymerase II promoter (GO:0006366)
      multicellular organismal development (GO:0007275)
      anterior/posterior axis specification (GO:0009948)
      epithelial structure maintenance (GO:0010669)
      Wnt receptor signaling pathway (GO:0016055)
      cerebellum development (GO:0021549)
      cerebellar Purkinje cell differentiation (GO:0021702)
      cellular component assembly (GO:0022607)
      regulation of DNA-dependent transcription, elongation (GO:0032784)
      somatic stem cell maintenance (GO:0035019)
      histone H3-K4 acetylation (GO:0043973)
      negative regulation of erythrocyte differentiation (GO:0045647)
      positive regulation of cell adhesion (GO:0045785)
      negative regulation of transcription, DNA-dependent (GO:0045892)
      positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
      positive regulation of hemoglobin biosynthetic process (GO:0046985)
      primitive erythrocyte differentiation (GO:0060319)
      head development (GO:0060322)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011480
(v2.0)
Ldb1NM_001113408,NM_01069716825
35.6326134.501160.03531.790971.417867.775841.6203266.04674.437861.3987
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011541
(v1.0)
Ldb116825
Maternal RNA0.94588
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011480
(v2.0)
Ldb116825
674/4190.1726374/419-0.2794166/4192.2328428/4191.3567108/4190.1009793/4190.3203
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011480
(v2.0)
Ldb116825
364/1670.6083199/1670.1359134/1673.193355/1672.401791/1671.1621561/1671.1441
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011480
(v2.0)
Ldb116825
110.591417662.84
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011480
(v2.0)
Ldb116825
29.8057838.21
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011541
(v1.0)
Ldb1NM_001113408,NM_01069716825
139.79110.75823.646849.437229.5993
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011541
(v1.0)
Ldb1NM_001113408,NM_01069716825
670.877459.389110.203250.117152.13
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011541
(v1.0)
Ldb1NM_001113408,NM_01069716825
146.16313.0315120.84
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011541
(v1.0)
Ldb1NM_001113408,NM_01069716825
142.67109.646197.265
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011541
(v1.0)
Ldb1NM_001113408,NM_01069716825
316.965500.873
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011541
(v1.0)
Ldb1NM_001113408,NM_01069716825
146.24812.853216.353
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011541
(v1.0)
Ldb1NM_001113408,NM_01069716825
21.893347.733651.7133
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011541
(v1.0)
Ldb1NM_001113408,NM_01069716825
163.856173.031
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011541
(v1.0)
Ldb1NM_001113408,NM_01069716825
64.364911.3177
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011541
(v1.0)
Ldb1NM_001113408,NM_01069716825
0.9915862.27331
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011541
(v1.0)
9200H3077H06-3Mm.4524Ldb116825
U039101NAP010011-001Ldb1;TC898071,TC898070O55204U,F,24.21854.17884.43244.52294.58384.57994.5835
MOE430 N/A
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011541
(v1.0)
A_51_P384754Ldb1NM_01069716825
11P1.9120.0999P
0011541
(v1.0)
A_51_P384756Ldb1NM_01069716825
11P3.3950.0523P
Proteome N/A