DBTMEE:0011541
| Gene | Ldb1 |
| Synonyms | CLIM2 |
| Description | LIM domain binding 1 |
| Locus | NM_010697 UCSC: chr19:46107091-46114111(-) OLP: chr19:46107091-46114111(-)
NM_001113408 UCSC: chr19:46107091-46119701(-) OLP: chr19:46107091-46119701(-)
|
| DB links |
Entrez 16825
MGI 894762
Ensembl ENSMUSG00000025223
Vega OTTMUSG00000033442
|
| Feature | protein-coding |
| GO_BP |
-
 21 Terms
transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery (GO:0000972)
gastrulation with mouth forming second (GO:0001702)
hair follicle development (GO:0001942)
transcription from RNA polymerase II promoter (GO:0006366)
multicellular organismal development (GO:0007275)
anterior/posterior axis specification (GO:0009948)
epithelial structure maintenance (GO:0010669)
Wnt receptor signaling pathway (GO:0016055)
cerebellum development (GO:0021549)
cerebellar Purkinje cell differentiation (GO:0021702)
cellular component assembly (GO:0022607)
regulation of DNA-dependent transcription, elongation (GO:0032784)
somatic stem cell maintenance (GO:0035019)
histone H3-K4 acetylation (GO:0043973)
negative regulation of erythrocyte differentiation (GO:0045647)
positive regulation of cell adhesion (GO:0045785)
negative regulation of transcription, DNA-dependent (GO:0045892)
positive regulation of transcription from RNA polymerase II promoter (GO:0045944)
positive regulation of hemoglobin biosynthetic process (GO:0046985)
primitive erythrocyte differentiation (GO:0060319)
head development (GO:0060322)
|
| GO_MF |
-
11 Terms
|
| GO_CC |
-
6 Terms
|
| KEGG | |
| Ver2_FPKM |
see DBTMEE:2011480 (v2.0)
|
| SPR_Histone_Erkek_5KaroundTSS |
N/A |
| SPR_Histone_Erkek_2KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_5KaroundTSS |
N/A |
| SPR_Methy_Kobayashi_2KaroundTSS |
N/A |
| SOLiD_OocyteTo4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | SPR_FPKM | Oo_FPKM | 1C_FPKM | 2C_FPKM | 4C_FPKM | MEF_FPKM |
|---|
0011541
(v1.0) | Ldb1 | NM_001113408,NM_010697 | 16825
| 139.79 | 110.758 | 23.6468 | 49.4372 | 29.5993 | |
|
| SOLiD_Illumina_Oo_1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | 1C_FPKM |
|---|
0011541
(v1.0) | Ldb1 | NM_001113408,NM_010697 | 16825
| 146.163 | 13.0315 | 120.84 |
|
| SOLiD_Partheno1C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 1C_FPKM | p1C_FPKM |
|---|
0011541
(v1.0) | Ldb1 | NM_001113408,NM_010697 | 16825
| 142.67 | 109.646 | 197.265 |
|
| SOLiD_Illumina_Oo_p1C_Sperm_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | SPR_FPKM | p1C_FPKM |
|---|
0011541
(v1.0) | Ldb1 | NM_001113408,NM_010697 | 16825
| 146.248 | 12.853 | 216.353 |
|
| SOLiD_Partheno4C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | 2C_FPKM | 4C_FPKM | p4C_FPKM |
|---|
0011541
(v1.0) | Ldb1 | NM_001113408,NM_010697 | 16825
| 21.8933 | 47.7336 | 51.7133 |
|
| Illumina_Oo_2C_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_FPKM | 2C_FPKM |
|---|
0011541
(v1.0) | Ldb1 | NM_001113408,NM_010697 | 16825
| 64.3649 | 11.3177 |
|
| SOLiD_SC_Oo_REPLICA_FPKM_gene_guided |
| DBTMEE | Gene | RefSeq | Entrez | Oo_1_1 | Oo_2_1 |
|---|
0011541
(v1.0) | Ldb1 | NM_001113408,NM_010697 | 16825
| 0.991586 | 2.27331 |
|
| NIA60mer |
| DBTMEE | Array_Feature_Number | Oligo_Parent_Clone | Unigene | Gene | Entrez | U_Cluster | NAP_Cluster | Gene_U/NAP | TIGR | SwissProt | EST | Oo | 1C | 2C | 4C | 8C | Morula | Blastocyst |
|---|
0011541
(v1.0) | 9200 | H3077H06-3 | Mm.4524 | Ldb1 | 16825
| U039101 | NAP010011-001 | Ldb1; | TC898071,TC898070 | O55204 | U,F,2 | 4.2185 | 4.1788 | 4.4324 | 4.5229 | 4.5838 | 4.5799 | 4.5835 |
|
| MOE430 |
N/A |
| Agilent44K |
| DBTMEE | Probe_ID | Gene | Acc | Entrez | Oo1_xFold | Oo1_pVal | Oo1_Flag | Oo2_xFold | Oo2_pVal | Oo2_Flag |
|---|
0011541
(v1.0) | A_51_P384754 | Ldb1 | NM_010697 | 16825
| 1 | 1 | P | 1.912 | 0.0999 | P |
0011541
(v1.0) | A_51_P384756 | Ldb1 | NM_010697 | 16825
| 1 | 1 | P | 3.395 | 0.0523 | P |
|
| Proteome |
N/A |
