DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011626
GeneLig4
SynonymsDNA ligase IV
tiny
Desc.ligase IV, DNA, ATP-dependent
LocusNM_176953 chr8:9970020-9976323(-)
DB links


Entrez 319583
MGI 1335098
Ensembl ENSMUSG00000049717
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
KEGG
  •   1 Terms
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011567
(v2.0)
Lig4NM_176953319583
1.9544435.312422.37299.748086.462974.217257.5642917.15627.84423.33442
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011626
(v1.0)
Lig4319583
Maternal RNA0.96427
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011567
(v2.0)
Lig4319583
732/4780.1018494/478-0.0686121/4781.5948363/4780.930616/478-2.7681113/478-2.6638
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011567
(v2.0)
Lig4319583
337/1520.6325215/1520.3819111/1523.0497314/1522.35894/152-2.907251/152-2.1421
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011567
(v2.0)
Lig4319583
76.431616047.77
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011567
(v2.0)
Lig4319583
5.1988766.84
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011626
(v1.0)
Lig4NM_176953319583
36.698315.47467.253184.493895.38499
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011626
(v1.0)
Lig4FR035140,NM_176953319583
43.946716.75858.109155.145936.19538
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011626
(v1.0)
Lig4NM_176953319583
38.37140.7147616.8831
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011626
(v1.0)
Lig4NM_176953319583
37.454315.319212.7256
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011626
(v1.0)
Lig4FR035140,NM_176953319583
17.018314.3219
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011626
(v1.0)
Lig4NM_176953319583
38.39370.7049713.957
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011626
(v1.0)
Lig4NM_176953319583
6.715314.339035.43638
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011626
(v1.0)
Lig4FR035140,NM_176953319583
5.090186.37508
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011626
(v1.0)
Lig4NM_176953319583
36.7057.1167
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011626
(v1.0)
Lig4NM_176953319583
14.60418.8452
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011626
(v1.0)
1439487_atMm.80584Lig4NM_176953.3319583
558.025475.575229.52500
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011626
(v1.0)
A_51_P362399Lig4NM_176953319583
11P0.8330.344P
0011626
(v1.0)
A_52_P569549Lig4AK048442319583
11P0.720.188P
Proteome N/A