DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011634
GeneLimd1
SynonymsD9Ertd192e
Desc.LIM domains containing 1
LocusNM_013860 chr9:123387819-123430670(+)
DB links


Entrez 29806
MGI 1352502
Ensembl ENSMUSG00000025239
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011574
(v2.0)
Limd1NM_01386029806
18.723526.778950.942822.2195.74324.8880422.146755.61387.214344.12532
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011634
(v1.0)
Limd129806
Minor ZGA0.91309
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011574
(v2.0)
Limd129806
664/538-0.2088399/538-0.5462442/5383.28861303/5382.601824/538-2.3809183/538-2.1459
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011574
(v2.0)
Limd129806
317/250-0.1695167/250-0.6947349/2504.0181885/2503.14228/250-2.761971/250-2.3907
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011574
(v2.0)
Limd129806
67.624613350.85
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011574
(v2.0)
Limd129806
26.87649129.53
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011634
(v1.0)
Limd1NM_01386029806
27.839335.387516.54083.9730215.7186
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011634
(v1.0)
Limd1NM_01386029806
93.838484.698952.839711.105149.3913
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011634
(v1.0)
Limd1NM_01386029806
29.10856.8473738.6086
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011634
(v1.0)
Limd1NM_01386029806
28.412835.032241.2036
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011634
(v1.0)
Limd1NM_01386029806
89.9932159.45
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011634
(v1.0)
Limd1NM_01386029806
29.12546.7535845.1907
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011634
(v1.0)
Limd1NM_01386029806
15.31423.836115.00329
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011634
(v1.0)
Limd1NM_01386029806
4.644045.9121
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011634
(v1.0)
Limd1NM_01386029806
8.777823.24924
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011634
(v1.0)
Limd1NM_01386029806
21.657921.223
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011634
(v1.0)
9357H3080B02-3Mm.10987Limd129806
U011195NAP121030-001Limd1;TC903763Q9QXD8U,F,22.7092.78963.09612.77852.57162.62912.5581
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011634
(v1.0)
1422730_atMm.10987Limd1NM_013860.229806
79.9124.07587.65062.475
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011634
(v1.0)
A_51_P266224Limd1NM_01386029806
11P0.4470.0789P
0011634
(v1.0)
A_52_P102620Limd1NM_01386029806
11P1.0420.753P
Proteome N/A