DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011639
GeneLims1
SynonymsLims1l
PINCH1
Desc.LIM and senescent cell antigen-like domains 1
LocusNM_026148 chr10:57786214-57887439(+)
NM_201242 chr10:57834202-57887439(+)
NM_001193303 chr10:57857121-57887439(+)
DB links


Entrez 110829
MGI 1195263
Ensembl ENSMUSG00000019920
Vega OTTMUSG00000024823
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011579
(v2.0)
Lims1NM_001193303,NM_026148,NM_201242110829
8.536434.222729.6379911.60189.0568915.988317.24356.783317.0876414.3293
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011639
(v1.0)
Lims1110829
2-Cell Transient0.76457
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011579
(v2.0)
Lims1110829
499/398-0.186361/398-0.256327/398-0.271589/398-0.82264/398-4.271972/398-3.0396
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011579
(v2.0)
Lims1110829
224/180-0.1961153/180-0.348520/1800.407477/1800.10481/180-4.467126/180-3.317
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011579
(v2.0)
Lims1110829
45.63699249.61
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011579
(v2.0)
Lims1110829
14.8415825.59
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011639
(v1.0)
Lims1NM_001193303,NM_026148,NM_201242110829
4.387326.642058.629576.272112.1039
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011639
(v1.0)
Lims1FR009035,FR194176,NM_001193303,NM_026148,NM_201242110829
22.098934.126827.025218.217725.8628
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011639
(v1.0)
Lims1NM_001193303,NM_026148,NM_201242110829
4.587343.121867.24663
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011639
(v1.0)
Lims1NM_001193303,NM_026148,NM_201242110829
4.47776.575365.02054
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011639
(v1.0)
Lims1FR009035,FR194176,NM_001193303,NM_026148,NM_201242110829
49.432152.5957
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011639
(v1.0)
Lims1NM_001193303,NM_026148,NM_201242110829
4.590013.07915.50636
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011639
(v1.0)
Lims1NM_001193303,NM_026148,NM_201242110829
7.989646.055964.89593
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011639
(v1.0)
Lims1FR009035,FR194176,NM_001193303,NM_026148,NM_201242110829
21.037119.2736
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011639
(v1.0)
Lims1NM_001193303,NM_026148,NM_201242110829
1.3850217.5808
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011639
(v1.0)
Lims1NM_001193303,NM_026148,NM_201242110829
2.94463.92932
NIA60mer
DBTMEEArray Feature NumberOligo Parent CloneUnigeneGeneEntrezU_ClusterNAP_ClusterGene_U/NAPTIGRSwissProtESTOo1C2C4C8CMorulaBlastocyst
0011639
(v1.0)
20053L0518A11-3Mm.29097Lims1l110829
U043076NAP101310-1Lims1l;TC863585Q9D7B2U,F,23.58373.64563.53873.4843.26823.53733.5894
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011639
(v1.0)
1418230_a_atMm.57734Lims1NM_001193303.1,NM_201242.1,NM_026148.3110829
167.8229.55279.6250308.525
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011639
(v1.0)
A_52_P222725Lims1NM_026148110829
11P0.3940.0729P
Proteome N/A