DBTMEE
Database of Transcriptome in Mouse Early Embryos


Gene Search:

DBTMEE:0011641
GeneLin28a
SynonymsLin-28
Lin28
Lin28a
Tex17
Desc.lin-28 homolog A (C. elegans)
LocusNM_145833 chr4:133559245-133574731(-)
DB links


Entrez 83557
MGI 1890546
Ensembl ENSMUSG00000050966
Vega OTTMUSG00000010211
Featureprotein-coding
GO(BP)
GO(MF)
GO(CC)
Ver2_FPKM
DBTMEEGeneRefSeqEntrezSPR_FPKMOo_FPKM1C_FPKM2C_FPKM4C_FPKMESC_FPKMMEF_FPKMp1C_FPKMp4C_FPKMiPSC_FPKM
2011581
(v2.0)
Lin28aNM_14583383557
059.3324131.07833.59845.961720.81710.136274131.40534.293833.974
SOLiD_Cluster_gene_guided
DBTMEEGeneEntrezClusterCorrelation
0011641
(v1.0)
Lin28a83557
1-Cell Transient0.96413
SPR_Histone_Erkek_+-5KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011581
(v2.0)
Lin28a83557
775/4380.3098477/4380.006891/4381.3104530/4381.6008567/4382.41912911/4382.1306
SPR_Histone_Erkek_+-2KfromTSS
DBTMEEGeneEntrezH3.3_1
(ChIP/Input)
H3.3_1
(Enrich; log2)
H3.3_2
(ChIP/Input)
H3.3_2
(Enrich; log2)
H3K4me3_1
(ChIP/Input)
H3K4me3_1
(Enrich; log2)
H3K4me3_2
(ChIP/Input)
H3K4me3_2
(Enrich; log2)
H3K27me3_1
(ChIP/Input)
H3K27me3_1
(Enrich; log2)
H3K27me3_2
(ChIP/Input)
H3K27me3_2
(Enrich; log2)
2011581
(v2.0)
Lin28a83557
412/1770.7029228/1770.247883/1772.4301452/1772.6667302/1772.79981529/1772.5047
SPR_Methy_Kobayashi_+-5KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011581
(v2.0)
Lin28a83557
52.781914536.4
SPR_Methy_Kobayashi_+-2KfromTSS
DBTMEEGeneEntrezTotal_mC_levelsNumber_of_mCsAveraged_Methylation_level(%)
2011581
(v2.0)
Lin28a83557
8.5225919.37
SOLiD_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011641
(v1.0)
Lin28aNM_14583383557
61.685390.626125.00431.87460.0876912
SOLiD_NMNR_Oo-4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKM2C_FPKM4C_FPKMMEF_FPKM
0011641
(v1.0)
Lin28aNM_14583383557
62.844284.381223.601631.68380.0659582
SOLiD_Illumina_Oo-1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKM1C_FPKM
0011641
(v1.0)
Lin28aNM_14583383557
64.4977098.875
SOLiD_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM1C_FPKMp1C_FPKM
0011641
(v1.0)
Lin28aNM_14583383557
62.956189.716197.1599
SOLiD_NMNR_Partheno1C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez1C_FPKMp1C_FPKM
0011641
(v1.0)
Lin28aNM_14583383557
86.496195.586
SOLiD_Illumina_Oo-p1C-Sperm_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKMSPR_FPKMp1C_FPKM
0011641
(v1.0)
Lin28aNM_14583383557
64.53510106.562
SOLiD_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez2C_FPKM4C_FPKMp4C_FPKM
0011641
(v1.0)
Lin28aNM_14583383557
23.149830.776223.7346
SOLiD_NMNR_Partheno4C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrez4C_FPKMp4C_FPKM
0011641
(v1.0)
Lin28aNM_14583383557
31.341424.6148
Illumina_Oo-2C_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_FPKM2C_FPKM
0011641
(v1.0)
Lin28aNM_14583383557
53.7454.27618
SOLiD_SC_Oo_REPLICA_FPKM_gene_guided
DBTMEEGeneRefSeqEntrezOo_1_1Oo_2_1
0011641
(v1.0)
Lin28aNM_14583383557
6.740267.48302
NIA60mer N/A
MOE430
DBTMEEProbe_IDUnigeneGeneRefSeqEntrezOo1C2C8CBlastocyst
0011641
(v1.0)
1421749_atMm.302567Lin28aNM_145833.183557
147.1243.875106.1758244.925
0011641
(v1.0)
1437752_atMm.302567Lin28aNM_145833.183557
217.125452.35181.65147.975110.925
Agilent44K
DBTMEEProbe_IDGeneAcc.EntrezOo1_x-foldOo1_p-value (t-test)Oo1_FlagOo2_x-foldOo2_p-value (t-test)Oo2_Flag
0011641
(v1.0)
A_52_P294305Lin28NM_14583383557
11P1.4890.169P
Proteome N/A